Alternatives and similar repositories for MR-APSS

Users that are interested in MR-APSS are comparing it to the libraries listed below

• ACDBio / AutoMR
  An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of su…
  ☆33Updated 3 years ago
• jingshuw / GRAPPLE
  An R package for Mendelian Randomization
  ☆39Updated last year
• MRCIEU / MRInstruments
  Data objects for various sets of instruments
  ☆47Updated 5 years ago
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆35Updated 5 months ago
• jwr-git / pwcoco
  Pair-wise conditional analysis and colocalisation
  ☆41Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆57Updated 4 years ago
• as2970 / EA_brain_AD_MR
  ☆41Updated 4 years ago
• WSpiller / MVMR
  MVMR R Package
  ☆52Updated last month
• qingyuanzhao / mr.raps
  R package for two-sample Mendelian randomization using the robust adjusted profile score
  ☆39Updated 2 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆55Updated last year
• MRCIEU / epigraphdb-pqtl
  This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.
  ☆41Updated 4 years ago
• gamazonlab / MR-JTI
  ☆57Updated 11 months ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆38Updated last year
• jean997 / cause
  R package for CAUSE
  ☆56Updated 2 years ago
• verena-zuber / demo_AMD
  ☆35Updated 8 months ago
• YangLabHKUST / XPASS
  Cross-population analysis using GWAS summary statistics
  ☆18Updated last year
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆37Updated 3 months ago
• hakyimlab / scPrediXcan
  ☆36Updated last week
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆38Updated 10 months ago
• gagelo01 / GagnonMR
  ☆54Updated last year
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆63Updated last year
• miargentieri / proteomic-age-ukb
  ☆50Updated 5 months ago
• gwas-partitioning / bnmf-clustering
  ☆43Updated 7 months ago
• alhenry / cvd1-hf
  Analysis code for Olink CVD1 - HF analysis
  ☆14Updated last year
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆95Updated 2 years ago
• eleanorsanderson / MediationMR
  ☆26Updated 5 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆72Updated 4 years ago
• xiechengyong123 / friendly2MR
  ☆43Updated last year
• comp-med / sparse-proteomic-prediction-of-common-and-rare-diseases
  This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI…
  ☆19Updated last year
• TiffanyAmariuta / TCSC
  TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
  ☆14Updated last year