Alternatives and similar repositories for VCM

Users that are interested in VCM are comparing it to the libraries listed below

• YangLabHKUST / XPASS
  Cross-population analysis using GWAS summary statistics
  ☆18Updated last year
• klarman-cell-observatory / scPhere
  ☆100Updated 2 years ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆65Updated last year
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 3 months ago
• caokai1073 / Pamona
  The software of Pamona, a partial manifold alignment algorithm.
  ☆19Updated 4 years ago
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆57Updated 6 years ago
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆13Updated last year
• gefeiwang / scLAMBDA
  Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA
  ☆12Updated 2 weeks ago
• Spencerfar / LatentVelo
  ☆24Updated last year
• raphael-group / DeST_OT
  Developmental Spatiotemporal Optimal Transport
  ☆11Updated 3 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆21Updated 8 months ago
• YangLabHKUST / MR-APSS
  Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics
  ☆42Updated 2 months ago
• Genentech / sVAE
  ☆63Updated last year
• YangLabHKUST / LOG-TRAM
  ☆9Updated 2 years ago
• mancusolab / susiepca
  Scalable Ultra-Sparse Bayesian PCA
  ☆29Updated last year
• pengminshi / cFIT
  Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data
  ☆9Updated 3 years ago
• SydneyBioX / scJoint
  ☆59Updated last year
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆67Updated last year
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆63Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆23Updated last month
• jaydu1 / VITAE
  Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior
  ☆29Updated 3 months ago
• bowang-lab / DeepVelo
  ☆47Updated last year
• gefeiwang / scMODAL
  scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links
  ☆12Updated 2 weeks ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated 11 months ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆35Updated last year
• JSB-UCLA / scDesign2
  An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated
  ☆25Updated 7 months ago
• duct317 / scDHA
  A tool for single-cell data analysis.
  ☆41Updated last year
• sqjin / scEpath
  An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
  ☆17Updated 4 years ago