Alternatives and similar repositories for VCM

Users that are interested in VCM are comparing it to the libraries listed below

• Spencerfar / LatentVelo
  ☆26Updated 2 years ago
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆29Updated last year
• caokai1073 / Pamona
  The software of Pamona, a partial manifold alignment algorithm.
  ☆20Updated 4 years ago
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆57Updated 7 years ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆69Updated 2 years ago
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 10 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆41Updated last year
• xzhoulab / SRTsim
  ☆17Updated 10 months ago
• HantaoShu / DeepSEM
  ☆90Updated 2 years ago
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• jaydu1 / VITAE
  Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior
  ☆32Updated 10 months ago
• kodaim1115 / scMM
  ☆18Updated 4 years ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆73Updated last year
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆36Updated 3 months ago
• YangLabHKUST / MR-APSS
  Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics
  ☆43Updated 10 months ago
• zpliulab / GENELink
  ☆35Updated 3 years ago
• YMa-lab / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated last year
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆21Updated 8 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆32Updated 2 years ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last month
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆31Updated 3 years ago
• ttgump / spaVAE
  Dependency-aware deep generative models for multitasking analysis of spatial genomics data
  ☆40Updated last year
• RucDongLab / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆49Updated 2 years ago
• raphael-group / DeST_OT
  Developmental Spatiotemporal Optimal Transport
  ☆13Updated 10 months ago
• cliffzhou92 / MuTrans-release
  ☆17Updated 4 years ago
• bowang-lab / DeepVelo
  ☆48Updated 2 years ago
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆100Updated 11 months ago
• ttgump / scDeepCluster_pytorch
  Pytorch implementation of scDeepCluster for Single Cell RNA-seq data
  ☆34Updated last year
• xuyungang / scIGANs
  Generative adversarial networks for single-cell RNA-seq imputation
  ☆39Updated 5 years ago