mxcai / VCM
R package VCM contains three approaches for solving variance components model: PX-EM algorithm, MM algorithm and Method of Moments
☆13Updated 2 years ago
Alternatives and similar repositories for VCM:
Users that are interested in VCM are comparing it to the libraries listed below
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆18Updated 3 months ago
- The software of Pamona, a partial manifold alignment algorithm.☆19Updated 3 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆56Updated 8 months ago
- Global Waddington-OT☆21Updated 5 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆30Updated 6 months ago
- Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics☆41Updated last week
- Git Repo for simulating Boolean Models☆33Updated 7 months ago
- Cross-population analysis using GWAS summary statistics☆18Updated 6 months ago
- ☆23Updated last year
- ☆58Updated last year
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆59Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆67Updated 11 months ago
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆27Updated 3 weeks ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- ☆45Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆56Updated 2 years ago
- Deep joint-leaning single-cell multi-omics model☆16Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- ☆21Updated last week
- ☆13Updated last year
- ☆14Updated 3 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Updated 6 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆124Updated 2 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆30Updated 7 months ago
- ☆17Updated 3 years ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆11Updated last year
- overview of spatial datasets☆69Updated 11 months ago
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆76Updated 3 years ago
- ☆16Updated last week