mxcai / VCM
R package VCM contains three approaches for solving variance components model: PX-EM algorithm, MM algorithm and Method of Moments
☆13Updated 3 weeks ago
Alternatives and similar repositories for VCM:
Users that are interested in VCM are comparing it to the libraries listed below
- The software of Pamona, a partial manifold alignment algorithm.☆19Updated 4 years ago
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆27Updated 2 weeks ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Updated 6 years ago
- Cross-population analysis using GWAS summary statistics☆18Updated 9 months ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆19Updated 5 months ago
- ☆14Updated 2 years ago
- ☆23Updated last year
- ☆45Updated 2 years ago
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆69Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 8 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics☆41Updated 2 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆60Updated last year
- Git Repo for simulating Boolean Models☆33Updated 9 months ago
- A simulator for single-cell expression data guided by gene regulatory networks☆59Updated 10 months ago
- ☆47Updated last year
- Global Waddington-OT☆23Updated 7 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆28Updated this week
- Deep Generative Modeling of RNA Velocity☆36Updated last month
- Additional code and analysis from the single-cell integration benchmarking project☆59Updated 2 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆12Updated last year
- ☆39Updated this week
- ☆10Updated 2 months ago
- ☆98Updated 2 years ago
- stPlus: reference-based enhancement of spatial transcriptomics☆19Updated last year
- ☆17Updated 3 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆61Updated 10 months ago
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆9Updated 3 years ago
- overview of spatial datasets☆71Updated last year