rsemeraro / PyPoreLinks
A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
☆20Updated 3 years ago
Alternatives and similar repositories for PyPore
Users that are interested in PyPore are comparing it to the libraries listed below
Sorting:
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- new repo☆28Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆29Updated 2 years ago
- Structural variant caller☆55Updated 3 years ago
- ☆34Updated 2 years ago
- ☆49Updated 11 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- ☆30Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- python plotly Circos from VCF☆40Updated last year
- perSVade: personalized Structural Variation detection☆40Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- ☆24Updated last month
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 7 months ago