A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
☆19Jun 21, 2022Updated 3 years ago
Alternatives and similar repositories for PyPore
Users that are interested in PyPore are comparing it to the libraries listed below
Sorting:
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Nov 29, 2022Updated 3 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆22Jan 23, 2026Updated last month
- ☆29Oct 17, 2023Updated 2 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 5 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆66Apr 21, 2025Updated 11 months ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding☆14Sep 11, 2020Updated 5 years ago
- Python bindings to spoa☆22Dec 3, 2025Updated 3 months ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆35Apr 17, 2016Updated 9 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- long-read depth breaking☆11Apr 19, 2018Updated 7 years ago
- Long Reads Annotation pipeline☆73Mar 31, 2022Updated 3 years ago
- Analysis components from Oxford Nanopore Research☆96Sep 4, 2024Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 7 years ago
- An easy way to run BioNano genomic analysis☆28Apr 9, 2021Updated 4 years ago
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆18Feb 18, 2022Updated 4 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 5 years ago
- ☆12Sep 11, 2025Updated 6 months ago
- Quality control for MinION sequencing data☆217Jan 26, 2023Updated 3 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 2 weeks ago
- ☆12Dec 1, 2021Updated 4 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated last year
- C++ library for parsing several formats in bioinformatics☆10May 18, 2023Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Feb 5, 2026Updated last month
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Feb 7, 2023Updated 3 years ago