Vaa3D / vaa3d_toolsLinks
www.vaa3d.org
☆112Updated last year
Alternatives and similar repositories for vaa3d_tools
Users that are interested in vaa3d_tools are comparing it to the libraries listed below
Sorting:
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆43Updated 3 months ago
- www.vaa3d.org☆80Updated 7 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆124Updated 3 weeks ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆70Updated 2 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Binary releases of Vaa3D and related software components☆46Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆55Updated 2 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆136Updated 2 weeks ago
- Developing a Brain Atlas through Deep Learning☆53Updated last month
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- An open-source application for the analysis and visualization of segmented vasculature datasets☆121Updated last year
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆88Updated last year
- Aligner for large scale serial section image data☆16Updated 2 years ago
- Software package for neuron reconstruction and visualization☆39Updated 3 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Tools for distributed alignment of massive images☆86Updated last week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated last month
- ☆38Updated last year
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆53Updated last week
- Multi-modal Image Registration And Connectivity anaLysis☆45Updated 2 weeks ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels…☆48Updated last year
- A napari plugin for itk-elastix☆39Updated last year
- Deep Learning for EM Connectomics☆15Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- GTree is a brain-wide tool for neuron tracing.☆16Updated 4 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆16Updated 4 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- 3D segmention tool☆13Updated 2 years ago