Vaa3D / vaa3d_tools

Related projects: ⓘ

• Vaa3D / v3d_external
  www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
  ☆41Updated this week
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆78Updated 6 years ago
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆42Updated 10 months ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆105Updated last week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆49Updated 4 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆65Updated last year
• lmbneuron / D-LMBmap
  ☆35Updated 6 months ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆50Updated last year
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆60Updated 5 years ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated 9 months ago
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆81Updated 6 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆74Updated last month
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆58Updated 4 years ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆62Updated 3 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆119Updated 2 weeks ago
• cuntzlab / treestoolbox
  TREES toolbox
  ☆26Updated this week
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆28Updated last year
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated 5 months ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆49Updated 3 weeks ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• JacobBumgarner / VesselVio
  An open-source application for the analysis and visualization of segmented vasculature datasets
  ☆100Updated 4 months ago
• SCIInstitute / fluorender
  FluoRender is an interactive rendering tool for confocal microscopy data visualization.
  ☆39Updated last month
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆39Updated 2 months ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆35Updated 3 months ago
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆50Updated 3 weeks ago
• JaneliaSciComp / SharkViewer
  SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.
  ☆24Updated last year
• cgohlke / roifile
  Read and write ImageJ ROI format
  ☆63Updated this week
• argunsah / SpineS
  Dendritic Spine Analysis Software
  ☆13Updated last year
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆41Updated this week