Vaa3D / vaa3d_toolsLinks
www.vaa3d.org
☆109Updated last year
Alternatives and similar repositories for vaa3d_tools
Users that are interested in vaa3d_tools are comparing it to the libraries listed below
Sorting:
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆42Updated 2 weeks ago
- www.vaa3d.org☆78Updated 7 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated this week
- Binary releases of Vaa3D and related software components☆44Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆68Updated 2 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆71Updated 3 years ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels…☆44Updated last year
- Developing a Brain Atlas through Deep Learning☆53Updated last year
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆49Updated 2 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- The ImageJ framework for quantification of neuronal anatomy☆49Updated this week
- Software package for neuron reconstruction and visualization☆38Updated last week
- ☆29Updated last year
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 5 years ago
- ☆13Updated 5 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 11 months ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆17Updated 3 weeks ago
- Aligner for large scale serial section image data☆16Updated last year
- GTree is a brain-wide tool for neuron tracing.☆15Updated 4 years ago
- FluoRender is an interactive tool for confocal microscopy data analysis.☆45Updated this week
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated 2 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆84Updated last year
- Tools for distributed alignment of massive images☆81Updated last month
- TREES toolbox☆28Updated last month
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated last year