Alternatives and similar repositories for release

Users that are interested in release are comparing it to the libraries listed below

• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆78Updated 7 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆120Updated this week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆59Updated 2 years ago
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆74Updated last month
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated last month
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆49Updated this week
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated 11 months ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated 2 months ago
• DylanMuir / ReadImageJROI
  Matlab function to import ROIs from ImageJ
  ☆27Updated 5 years ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated last week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆49Updated 2 weeks ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆56Updated last week
• imaris / ImarisWriter
  ☆37Updated last year
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 11 months ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 3 months ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 2 years ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 3 weeks ago
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆29Updated 2 months ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago
• embl-cba / elastix-wrapper
  ☆13Updated 4 months ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆72Updated 3 weeks ago
• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆109Updated last year
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago