GTreeSoftware / GTreeLinks
GTree is a brain-wide tool for neuron tracing.
☆16Updated 4 years ago
Alternatives and similar repositories for GTree
Users that are interested in GTree are comparing it to the libraries listed below
Sorting:
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Updated 2 years ago
- Deep Learning for EM Connectomics☆15Updated 3 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆128Updated last week
- Developing a Brain Atlas through Deep Learning☆53Updated 2 months ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Tools for distributed alignment of massive images☆86Updated 3 weeks ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 3 weeks ago
- www.vaa3d.org☆113Updated last year
- www.vaa3d.org☆80Updated 7 years ago
- ☆21Updated 4 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆70Updated 2 years ago
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- 🌈☆62Updated 6 months ago
- ☆16Updated 8 years ago
- ☆31Updated 4 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- Workshop materials for "I2K 2022: From Images to Knowledge" conference☆11Updated 3 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆54Updated this week
- ☆32Updated 2 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 2 months ago
- Software package for neuron reconstruction and visualization☆39Updated 4 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆137Updated this week