GTreeSoftware / GTreeLinks
GTree is a brain-wide tool for neuron tracing.
☆16Updated 4 years ago
Alternatives and similar repositories for GTree
Users that are interested in GTree are comparing it to the libraries listed below
Sorting:
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated 2 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 5 years ago
- Deep Learning for EM Connectomics☆15Updated 2 years ago
- www.vaa3d.org☆110Updated last year
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆69Updated 2 years ago
- www.vaa3d.org☆79Updated 7 years ago
- Developing a Brain Atlas through Deep Learning☆53Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆123Updated 2 weeks ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated last week
- ☆21Updated 4 years ago
- 🌈☆59Updated 4 months ago
- Tools for distributed alignment of massive images☆85Updated 2 weeks ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆73Updated 3 years ago
- ☆31Updated 4 years ago
- ☆16Updated 8 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆50Updated 2 weeks ago
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 8 months ago
- ☆32Updated last week
- ☆37Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- Software package for neuron reconstruction and visualization☆39Updated 2 months ago
- Axon/Myelin segmentation using Deep Learning☆122Updated this week
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Updated 3 years ago
- Three dimensional cross-modal image inference☆158Updated 4 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆34Updated last year