BICCN / cell-locator
manually align specimens to annotated 3D spaces
☆19Updated last year
Related projects ⓘ
Alternatives and complementary repositories for cell-locator
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated this week
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Updated 9 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- A multi-dimensional spatial image data structure for scientific Python.☆37Updated 3 months ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- ☆12Updated 8 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆46Updated 2 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆51Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆27Updated last week
- Python API and Jupyter widget for Vitessce☆40Updated this week
- AICS ML Segmentation (One-Way) Mirror☆26Updated 3 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated last month
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆15Updated 3 years ago
- Whole slide image registration through wsireg in napari.☆11Updated last year
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆85Updated 3 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆27Updated this week
- ☆14Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated last week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆48Updated last week
- ☆35Updated this week
- Efficient cell detection in large images using cellfinder in napari☆24Updated 10 months ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆12Updated 4 months ago
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆24Updated 3 years ago