Alternatives and similar repositories for cell-locator:

Users that are interested in cell-locator are comparing it to the libraries listed below

• aplbrain / saber
  ☆16Updated last year
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆17Updated 9 years ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆33Updated 3 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 4 years ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆48Updated 2 weeks ago
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆37Updated 7 months ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆43Updated 2 weeks ago
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆36Updated 3 years ago
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆26Updated 3 weeks ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆17Updated last month
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆19Updated 3 weeks ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated last week
• AllenInstitute / open_dataset_tools
  Tools for accessing open data sets published by the Allen Institute for Brain Sciences
  ☆11Updated 3 years ago
• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆15Updated 3 years ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆50Updated 2 weeks ago
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• multiFISH / EASI-FISH
  Tools and scripts for EASI-FISH image data analysis
  ☆17Updated 2 years ago
• niaid / imaris_extensions
  Algorithmic and Utility Extensions for the Imaris Program
  ☆14Updated 4 months ago
• AllenInstitute / abc_atlas_access
  Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
  ☆59Updated this week
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆26Updated 9 months ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆58Updated last year
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆80Updated last week
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆29Updated 3 months ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆88Updated 3 years ago
• niaid / sitk-ibex
  Aligning images acquired with the IBEX microscopy imaging technique
  ☆17Updated 3 weeks ago
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆24Updated 3 years ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆34Updated 2 months ago
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆36Updated 4 years ago
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆35Updated last year