ActiveBrainAtlas / MouseBrainAtlasLinks
A system for building mouse brain atlas from histology series
☆11Updated 5 years ago
Alternatives and similar repositories for MouseBrainAtlas
Users that are interested in MouseBrainAtlas are comparing it to the libraries listed below
Sorting:
- Developing a Brain Atlas through Deep Learning☆53Updated 4 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- ☆13Updated 6 years ago
- ☆45Updated 5 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- The ImageJ framework for quantification of neuronal anatomy☆53Updated last week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 4 months ago
- MorphoFeatures code and data☆22Updated 2 years ago
- Software package for neuron reconstruction and visualization☆40Updated 6 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆140Updated last week
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- CytoData 2016 – origin story☆18Updated 8 years ago
- Segmentation of anatomical structures in a common coordinate space☆34Updated last week
- Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.☆18Updated 5 years ago
- ☆14Updated last year
- ☆32Updated 4 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆130Updated 2 weeks ago
- ☆34Updated 6 months ago
- CloudReg☆11Updated last year
- Dimensionality-reduction and classification for morphology and electrophysiology☆13Updated last year
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆62Updated last week
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆24Updated 8 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- A napari plugin for itk-elastix☆39Updated last week
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- www.vaa3d.org☆113Updated last year