ActiveBrainAtlas / MouseBrainAtlasLinks
A system for building mouse brain atlas from histology series
☆11Updated 4 years ago
Alternatives and similar repositories for MouseBrainAtlas
Users that are interested in MouseBrainAtlas are comparing it to the libraries listed below
Sorting:
- Developing a Brain Atlas through Deep Learning☆53Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated last week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated this week
- Tools for distributed alignment of massive images☆85Updated 2 weeks ago
- ☆45Updated 5 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆17Updated 2 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- The ImageJ framework for quantification of neuronal anatomy☆50Updated this week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆123Updated 2 weeks ago
- ☆13Updated 5 years ago
- ☆29Updated 6 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Software package for neuron reconstruction and visualization☆39Updated 2 months ago
- MethodsJ2☆14Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- ☆34Updated 2 months ago
- Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.☆18Updated 4 years ago
- CloudReg☆11Updated last year
- ☆20Updated 6 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆141Updated last month
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆15Updated 11 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- ☆32Updated last week
- Dimensionality-reduction and classification for morphology and electrophysiology☆13Updated 10 months ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆50Updated 2 weeks ago