ActiveBrainAtlas / MouseBrainAtlas
A system for building mouse brain atlas from histology series
☆11Updated 4 years ago
Alternatives and similar repositories for MouseBrainAtlas:
Users that are interested in MouseBrainAtlas are comparing it to the libraries listed below
- Developing a Brain Atlas through Deep Learning☆52Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 4 years ago
- Tools for distributed alignment of massive images☆81Updated last month
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 9 years ago
- ☆34Updated last year
- ☆13Updated 5 years ago
- ☆45Updated 4 years ago
- ☆18Updated 3 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 5 months ago
- CloudReg☆11Updated 11 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 4 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆133Updated 2 weeks ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated this week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- Dimensionality-reduction and classification for morphology and electrophysiology☆13Updated 6 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ☆10Updated 2 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 8 months ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated last year
- ☆18Updated 2 years ago
- Tools for working with single-neuron morphological reconstructions☆21Updated 11 months ago
- Segmentation of anatomical structures in a common coordinate space☆30Updated 3 weeks ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 2 years ago
- MethodsJ2☆14Updated 2 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆11Updated 2 years ago