morphonets / SNTLinks
The framework for quantification of neuronal anatomy
☆55Updated this week
Alternatives and similar repositories for SNT
Users that are interested in SNT are comparing it to the libraries listed below
Sorting:
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Tools for distributed alignment of massive images☆92Updated this week
- ☆19Updated 3 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- ☆46Updated 5 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated this week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆138Updated last month
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated 2 years ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆25Updated 3 years ago
- Brainways☆22Updated 5 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- GPU-based 3D non-rigid volumetric registration☆43Updated 5 months ago
- ABBA, controlled from python☆18Updated 2 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- A Python interface to access neuroanatomical atlases☆172Updated this week
- ☆24Updated this week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Updated 4 years ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 3 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ☆18Updated 3 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated last week
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 3 months ago