AllenCell / aics-segmentation
Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
☆28Updated 8 months ago
Alternatives and similar repositories for aics-segmentation:
Users that are interested in aics-segmentation are comparing it to the libraries listed below
- ☆31Updated 2 years ago
- Piecewise alignment for layers of mosaics☆23Updated this week
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 6 months ago
- MorphoFeatures code and data☆20Updated last year
- ☆20Updated this week
- ☆32Updated last year
- ☆23Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- QuPath extension for Cellsparse☆18Updated 4 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago
- Cloud-based data annotation tools for biological images☆79Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 weeks ago
- Python package for deep learning based image to image transformation☆52Updated 10 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆17Updated 4 months ago
- ☆153Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆53Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last week
- Codebase for "A Foundation Model for Cell Segmentation"☆79Updated 2 weeks ago
- Unsupervised Instance Segmentation in Microscopy☆23Updated last year
- Evaluating the quality of a cell segmentation method without reference.☆10Updated last week
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆17Updated last month
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆16Updated last month
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Segment Anything for Histopathology☆23Updated last week
- ☆60Updated 2 months ago
- Microsopic Image Analyzer (MIA)☆29Updated last year