AllenCell / aics-segmentationLinks
Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
☆26Updated last year
Alternatives and similar repositories for aics-segmentation
Users that are interested in aics-segmentation are comparing it to the libraries listed below
Sorting:
- ☆32Updated last week
- Piecewise alignment for layers of mosaics☆28Updated last month
- Cloud-based data annotation tools for biological images☆81Updated last year
- Foundation Model for Multiplex Spatial Proteomic Images☆69Updated 2 months ago
- ☆175Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- multimodal whole slide image registration in a graph structure☆90Updated last year
- Unsupervised Instance Segmentation in Microscopy☆23Updated last year
- Python package for deep learning based image to image transformation☆53Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- ☆34Updated last year
- The official QuPath extension for InstanSeg☆24Updated 3 weeks ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- ☆26Updated 3 months ago
- simple package for augmentation of n-dimensional arrays☆33Updated last year
- QuPath extension for Cellsparse☆19Updated 3 months ago
- ☆20Updated 3 months ago
- Raw format to OME-TIFF converter☆55Updated 2 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆99Updated 3 weeks ago
- Microsopic Image Analyzer (MIA)☆28Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆57Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- 3D segmentation for cells and organoids of 3D multichannel images☆18Updated last month
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆74Updated 4 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆74Updated last year
- QuPath extension to interactively align images☆24Updated last month
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Updated last year
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.