Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
☆25Jul 22, 2024Updated last year
Alternatives and similar repositories for aics-segmentation
Users that are interested in aics-segmentation are comparing it to the libraries listed below
Sorting:
- ☆32Jul 31, 2025Updated 7 months ago
- Web Image Processing Pipeline (WIPP)☆26Dec 19, 2025Updated 3 months ago
- ilastik plugin for napari☆14Mar 2, 2026Updated 2 weeks ago
- Automated Cell Toolkit☆24Oct 15, 2025Updated 5 months ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- ☆10Nov 5, 2020Updated 5 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 5 months ago
- Codes for the ICLR 2022 paper: Trigger Hunting with a Topological Prior for Trojan Detection☆11Sep 19, 2023Updated 2 years ago
- ☆22May 1, 2025Updated 10 months ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆18Nov 18, 2025Updated 4 months ago
- Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quant…☆35Aug 25, 2025Updated 6 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Structure-Aware Image Segmentation with Homotopy Warping☆12Sep 19, 2023Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆39Oct 15, 2025Updated 5 months ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 5 years ago
- Code for Paper "Evidential Softmax for Sparse MultimodalDistributions in Deep Generative Models"☆11Oct 25, 2021Updated 4 years ago
- Repository for IPMI2020 TopoTxR: A Topological Biomarker forPredicting Treatment Response in Breast Cancer☆13Mar 17, 2022Updated 4 years ago
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated 2 months ago
- ☆25May 16, 2023Updated 2 years ago
- A template repo used to make new napari plugins☆34Mar 2, 2026Updated 2 weeks ago
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 4 months ago
- ☆52May 1, 2025Updated 10 months ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆13May 15, 2023Updated 2 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆117Mar 13, 2026Updated last week
- Code for JMLR paper ``Learning Representations of Persistence Barcodes``☆24Mar 6, 2020Updated 6 years ago
- Particle Swarm Optimization algorithm in Python☆13Apr 23, 2024Updated last year
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆25Updated this week
- Genome scale metabolic models in SBML format☆10Nov 16, 2021Updated 4 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- PyTorch code for the Neurips 2021 paper: Fairness via Representation Neutralization☆10Oct 26, 2021Updated 4 years ago
- napari widgets for start-to-finish batch processing☆15Mar 1, 2026Updated 2 weeks ago
- Parameter estimation and model calibration using Genetic Algorithm optimization in Python.☆12Aug 16, 2024Updated last year
- ☆11Sep 27, 2018Updated 7 years ago