argunsah / SpineSLinks
Dendritic Spine Analysis Software
☆13Updated 2 years ago
Alternatives and similar repositories for SpineS
Users that are interested in SpineS are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- The ImageJ framework for quantification of neuronal anatomy☆49Updated this week
- CloudReg☆11Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 months ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 3 years ago
- Flow-Registration toolbox for 2P motion compensation☆24Updated 10 months ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 6 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Geometry Processing of Conventionally Produced Mouse Brain Slice Images☆7Updated 5 years ago
- motion correction☆17Updated 2 years ago
- ☆18Updated 3 years ago
- Tools for distributed alignment of massive images☆81Updated last month
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated 2 years ago
- ☆34Updated 2 weeks ago
- ☆8Updated 3 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 months ago
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆80Updated last week
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 7 months ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆24Updated last month
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Brainways☆18Updated 2 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- ☆45Updated 5 years ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Updated 3 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆96Updated last month
- ☆22Updated 3 months ago
- 3-D imaging visualisation through slicing☆29Updated 4 months ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago