Alternatives and similar repositories for SpineS

Users that are interested in SpineS are comparing it to the libraries listed below

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• morphonets / SNT
  The framework for quantification of neuronal anatomy
  ☆55Updated this week
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆31Updated last year
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆67Updated 6 years ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆53Updated 6 months ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated last year
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• samik1986 / ML_Semantic_Segmenation_NMI
  ☆20Updated 3 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆56Updated last week
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 2 months ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆93Updated 4 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆144Updated last week
• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆114Updated last year
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated 2 years ago
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆29Updated 3 years ago
• BigNeuron / Code_and_Analysis_Tools
  ☆12Updated 3 years ago
• embl-cba / elastix-wrapper
  ☆15Updated last year
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• ankilab / DeepD3
  ☆24Updated last week
• nel-lab / FIOLA
  ☆34Updated 8 months ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆29Updated this week
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆34Updated last month
• imagej / i2k-2022-pyimagej
  Workshop materials for "I2K 2022: From Images to Knowledge" conference
  ☆11Updated 3 years ago
• JaneliaSciComp / awesome-janelia-software
  A curated list of awesome Janelia software
  ☆17Updated 11 months ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆55Updated last year
• zhoupc / OASIS_matlab
  ☆41Updated 4 years ago
• ImageScience / NeuronJ
  ImageJ plugin for neurite tracing and analysis
  ☆13Updated 5 years ago
• FlowRegSuite / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆27Updated 4 months ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated 2 years ago