argunsah / SpineSLinks
Dendritic Spine Analysis Software
☆13Updated 2 years ago
Alternatives and similar repositories for SpineS
Users that are interested in SpineS are comparing it to the libraries listed below
Sorting:
- CloudReg☆11Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- The framework for quantification of neuronal anatomy☆55Updated 3 weeks ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- 3-D imaging visualisation through slicing☆31Updated 11 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- ☆20Updated 3 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆141Updated last week
- Workshop materials for "I2K 2022: From Images to Knowledge" conference☆11Updated 3 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Updated 4 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆20Updated last year
- A curated list of awesome Janelia software☆17Updated 10 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- ☆23Updated 3 months ago
- ☆41Updated 4 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆32Updated last week
- Developing a Brain Atlas through Deep Learning☆53Updated 4 months ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Updated 3 years ago
- https://nutil.readthedocs.io/en/latest/☆13Updated last month
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 6 years ago
- Flow-Registration toolbox for 2P motion compensation☆27Updated 3 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆26Updated 3 weeks ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Updated 4 years ago
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- Matlab function to import ROIs from ImageJ☆27Updated 6 years ago
- ☆14Updated 10 months ago
- Live Mouse Tracker analysis☆34Updated last week