Alternatives and similar repositories for SpineS:

Users that are interested in SpineS are comparing it to the libraries listed below

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• Neural-Systems-at-UIO / nutil
  https://nutil.readthedocs.io/en/latest/
  ☆12Updated last month
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated last month
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆48Updated this week
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 2 weeks ago
• ankilab / DeepD3
  ☆21Updated last month
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆29Updated 3 months ago
• imagej / i2k-2022-pyimagej
  Workshop materials for "I2K 2022: From Images to Knowledge" conference
  ☆11Updated 2 years ago
• nitinagarwal / Mouse_Brain_Registration
  Geometry Processing of Conventionally Produced Mouse Brain Slice Images
  ☆7Updated 5 years ago
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆23Updated 8 months ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• adamshch / SEUDO
  ☆8Updated 3 years ago
• bkntr / brainways
  Brainways
  ☆16Updated last month
• nel-lab / FIOLA
  ☆34Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 5 months ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• NICALab / SUPPORT
  Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
  ☆79Updated last month
• samuroi / SamuROI
  SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
  ☆17Updated 6 years ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆16Updated this week
• AllenCell / napari-allencell-segmenter
  A plugin that enables image segmentation provided by Allen Institute for Cell Science
  ☆16Updated last year
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 11 months ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆23Updated last year
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆30Updated last week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• DylanMuir / ReadImageJROI
  Matlab function to import ROIs from ImageJ
  ☆27Updated 5 years ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆88Updated 3 years ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆52Updated last year