Alternatives and similar repositories for SpineS:

Users that are interested in SpineS are comparing it to the libraries listed below

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• nitinagarwal / Mouse_Brain_Registration
  Geometry Processing of Conventionally Produced Mouse Brain Slice Images
  ☆7Updated 5 years ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 3 weeks ago
• ankilab / DeepD3
  ☆21Updated 2 weeks ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆46Updated this week
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆22Updated 7 months ago
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆29Updated 2 months ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• nel-lab / FIOLA
  ☆34Updated last year
• neurodata / CloudReg
  CloudReg
  ☆11Updated 11 months ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• Neural-Systems-at-UIO / nutil
  https://nutil.readthedocs.io/en/latest/
  ☆12Updated 2 weeks ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆88Updated 3 years ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 10 months ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 2 weeks ago
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆28Updated 2 years ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 5 months ago
• adamcohenlab / invivo-imaging
  Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
  ☆14Updated last year
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆91Updated last week
• zhoupc / OASIS_matlab
  ☆35Updated 3 years ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆27Updated this week
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆44Updated 4 months ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆133Updated last week
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆21Updated 2 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆48Updated last year
• samuroi / SamuROI
  SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
  ☆17Updated 5 years ago