cuntzlab / treestoolboxLinks
TREES toolbox
☆28Updated 2 months ago
Alternatives and similar repositories for treestoolbox
Users that are interested in treestoolbox are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated 2 weeks ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- GPU-based 3D non-rigid volumetric registration☆32Updated 3 weeks ago
- motion correction☆17Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆89Updated 7 months ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆14Updated 2 years ago
- Browser-based NWB visualization and DANDI exploration☆58Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- ☆38Updated 3 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆74Updated 6 months ago
- Live Mouse Tracker analysis☆29Updated 2 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆27Updated 3 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆144Updated 3 weeks ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 11 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆30Updated 5 years ago
- Brainways☆18Updated last month
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆61Updated this week
- ☆52Updated 9 months ago
- Flow-Registration toolbox for 2P motion compensation☆24Updated 11 months ago
- Histology processing☆66Updated 2 weeks ago
- ☆8Updated 3 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 8 months ago
- ☆34Updated last month
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated 2 months ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 3 weeks ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year