cuntzlab / treestoolboxLinks
TREES toolbox
☆28Updated 5 months ago
Alternatives and similar repositories for treestoolbox
Users that are interested in treestoolbox are comparing it to the libraries listed below
Sorting:
- Automated 3D brain registration with support for multiple species and atlases.☆137Updated this week
- Automated 3D cell detection in very large images☆218Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A Python interface to access neuroanatomical atlases☆164Updated 3 weeks ago
- Brain flatmaps generation☆11Updated 3 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- GPU-based 3D non-rigid volumetric registration☆41Updated last month
- Umbrella package to help install/load nat packages☆11Updated 4 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated this week
- Live Mouse Tracker analysis☆32Updated this week
- Neuronal Morphology Analysis Tool☆108Updated 7 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 2 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 2 weeks ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆128Updated last week
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Updated 5 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆54Updated this week
- Serial-section automated anatomy extension for ScanImage☆16Updated last month
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 11 months ago
- Binary releases of Vaa3D and related software components☆46Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- motion correction☆17Updated 2 years ago
- 3-D imaging visualisation through slicing☆31Updated 8 months ago
- Browser-based NWB visualization and DANDI exploration☆60Updated last week
- ☆34Updated 4 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …☆22Updated 2 years ago