Alternatives and similar repositories for treestoolbox

Users that are interested in treestoolbox are comparing it to the libraries listed below

• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆140Updated last week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated last week
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated 2 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆167Updated last week
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆33Updated last week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆41Updated 3 months ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆53Updated last week
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆222Updated last week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆34Updated last week
• sanderslab / magellanmapper
  MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
  ☆22Updated last week
• nel-lab / FIOLA
  ☆34Updated 6 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆54Updated last year
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆108Updated 9 months ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆43Updated 4 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated 2 weeks ago
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆153Updated 3 years ago
• int-brain-lab / atlas
  Brain flatmaps generation
  ☆11Updated 3 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated 2 years ago
• zhoupc / OASIS_matlab
  ☆41Updated 4 years ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆71Updated last week
• SainsburyWellcomeCentre / masiv
  MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data
  ☆14Updated 5 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆130Updated 2 weeks ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆47Updated last year
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated last month