Alternatives and similar repositories for Vaa3D_Wiki

Users that are interested in Vaa3D_Wiki are comparing it to the libraries listed below

• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆109Updated last year
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆45Updated last year
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆74Updated 2 months ago
• Vaa3D / v3d_external
  www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
  ☆42Updated last month
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆120Updated last month
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆85Updated last year
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆84Updated 3 weeks ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆50Updated last week
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆55Updated 3 weeks ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated last month
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 2 weeks ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆60Updated last month
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆90Updated 3 years ago
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 3 years ago
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆377Updated 2 weeks ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated last year
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated last year
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆49Updated last week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆83Updated last week
• DylanMuir / ReadImageJROI
  Matlab function to import ROIs from ImageJ
  ☆27Updated 5 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• SWC-Advanced-Microscopy / StitchIt
  Stitching of large tiled datasets
  ☆20Updated 3 months ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆69Updated 2 years ago
• InsightSoftwareConsortium / ITKMontage
  Montaging for microscopy imaging files
  ☆30Updated 2 weeks ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆67Updated 5 years ago
• SCIInstitute / fluorender
  FluoRender is an interactive tool for confocal microscopy data analysis.
  ☆45Updated last week