Alternatives and similar repositories for v3d_external:

Users that are interested in v3d_external are comparing it to the libraries listed below

• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆109Updated 11 months ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆79Updated 7 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆67Updated 2 years ago
• SCIInstitute / fluorender
  FluoRender is an interactive tool for confocal microscopy data analysis.
  ☆42Updated this week
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆44Updated last year
• lmbneuron / D-LMBmap
  ☆37Updated last year
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆119Updated this week
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆83Updated last year
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated this week
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆15Updated last year
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 8 months ago
• mhe / pynrrd
  Simple pure-python module for reading and writing nrrd files.
  ☆120Updated 2 months ago
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 2 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆28Updated 2 years ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 4 years ago
• AICONSlab / MIRACL
  Multi-modal Image Registration And Connectivity anaLysis
  ☆43Updated 2 weeks ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated last month
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆73Updated last month
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆52Updated last year
• knossos-project / knossos
  KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…
  ☆74Updated this week
• SlicerDMRI / SlicerDMRI
  Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
  ☆78Updated last month
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆64Updated 5 years ago
• MIDA-group / inspire
  INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration
  ☆11Updated 3 years ago
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆86Updated 5 years ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆69Updated 3 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆47Updated this week
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆56Updated 2 months ago
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆59Updated 2 years ago