Alternatives and similar repositories for v3d_external:

Users that are interested in v3d_external are comparing it to the libraries listed below

• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆108Updated last year
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆78Updated 7 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆67Updated 2 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆48Updated last week
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆44Updated last year
• JacobBumgarner / VesselVio
  An open-source application for the analysis and visualization of segmented vasculature datasets
  ☆111Updated 11 months ago
• SCIInstitute / fluorender
  FluoRender is an interactive tool for confocal microscopy data analysis.
  ☆45Updated this week
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated last year
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆84Updated last year
• knossos-project / knossos
  KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…
  ☆74Updated last month
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated last month
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated 10 months ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆37Updated this week
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated 10 months ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆70Updated 3 years ago
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆87Updated 6 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆59Updated 3 weeks ago
• mhe / pynrrd
  Simple pure-python module for reading and writing nrrd files.
  ☆122Updated 3 months ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆120Updated this week
• SCIInstitute / Seg3D
  Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the Universit…
  ☆113Updated last year
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆16Updated 3 years ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆15Updated last year
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated 3 weeks ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated 3 weeks ago
• lmbneuron / D-LMBmap
  ☆37Updated last year
• BigNeuron / BigNeuron-Wiki
  Documentations of BigNeuron Project progress
  ☆24Updated 9 years ago
• MIC-DKFZ / MITK-Diffusion
  MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
  ☆92Updated 8 months ago