Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
☆73Nov 16, 2022Updated 3 years ago
Alternatives and similar repositories for rivuletpy
Users that are interested in rivuletpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆211Updated this week
- Documentations of BigNeuron Project progress☆24Feb 3, 2016Updated 10 years ago
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆42Sep 26, 2025Updated 9 months ago
- Structure-Aware Image Segmentation with Homotopy Warping☆14Sep 19, 2023Updated 2 years ago
- Centerline Extraction, Skeletonization Methods, and Interbranch/Pore Segment Measurements.☆20Nov 2, 2014Updated 11 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neuron…☆77Jun 12, 2026Updated last month
- ☆16Nov 2, 2016Updated 9 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- ☆16Jul 4, 2021Updated 5 years ago
- Implementation of the DeepVesselNet deep learning network☆155Jul 7, 2023Updated 3 years ago
- ☆14Dec 4, 2024Updated last year
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- A collection of tools for manipulation of morphological features in patient-specific geometries☆33Sep 26, 2024Updated last year
- Neuronal Morphology Analysis Tool☆109Feb 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithm☆12Apr 9, 2021Updated 5 years ago
- Extract brain and remove skulls from brain CT and CTA images☆35Jul 3, 2023Updated 3 years ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆31Jul 19, 2021Updated 5 years ago
- ☆16Jul 20, 2021Updated 5 years ago
- ☆290Feb 14, 2024Updated 2 years ago
- This repository contains the implementation for our work "Learning Topological Interactions for Multi-Class Medical Image Segmentation", …☆85Feb 19, 2024Updated 2 years ago
- U-net based CNN for segmenting blood vessel and thereafter removal of vessels from fundus image☆12Jul 13, 2020Updated 6 years ago
- The framework for quantification of neuronal anatomy☆60Updated this week
- The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Co…☆202Aug 30, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An interactive software to extract vessel centerline☆66Jun 2, 2026Updated last month
- 3D shape analysis using deep learning☆32Oct 8, 2025Updated 9 months ago
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated last year
- ☆21Feb 22, 2024Updated 2 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆58Mar 11, 2024Updated 2 years ago
- Discrete Morse-based pipeline for neuron tracing on tracer injection and single-neuron data sets.☆13Jan 14, 2021Updated 5 years ago
- ☆13May 1, 2025Updated last year
- Deep 3D Vessel Segmentation based on Cross Transformer Network☆22Aug 10, 2022Updated 3 years ago
- ☆12May 20, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- This is a release code of the paper "Fuzzy Attention Neural Network to Tackle Discontinuity in Airway Segmentation"☆17May 5, 2023Updated 3 years ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆24Jul 9, 2026Updated 2 weeks ago
- ☆16Aug 26, 2019Updated 6 years ago
- ☆126Jun 7, 2026Updated last month
- www.vaa3d.org☆115Apr 25, 2024Updated 2 years ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆128Jul 6, 2026Updated 2 weeks ago