Alternatives and similar repositories for rivuletpy

Users that are interested in rivuletpy are comparing it to the libraries listed below

• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆47Updated 11 months ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆70Updated 3 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 6 months ago
• pyushkevich / greedy
  Very fast greedy diffeomorphic registration code
  ☆72Updated this week
• Vaa3D / v3d_external
  www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
  ☆42Updated this week
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆150Updated this week
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• mhaft / DeepVess
  ☆29Updated last year
• giesekow / deepvesselnet
  Implementation of the DeepVesselNet deep learning network
  ☆147Updated last year
• BigNeuron / Data
  ☆16Updated 8 years ago
• ericspod / Eidolon
  Biomedical Visualization and Analysis Framework
  ☆41Updated last year
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆48Updated 3 weeks ago
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆87Updated 6 years ago
• InsightSoftwareConsortium / ITKTubeTK
  TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …
  ☆52Updated last month
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• mhe / pynrrd
  Simple pure-python module for reading and writing nrrd files.
  ☆122Updated 3 months ago
• ellisdg / frangi3d
  Computes vesselness scores for 3-dimensional images.
  ☆70Updated 8 years ago
• lassoan / SlicerElastix
  This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.
  ☆53Updated 3 months ago
• Rhoana / biologicalgraphs
  Biologically-Constrained Graphs for Global Connectomics Reconstruction
  ☆10Updated 4 years ago
• sbonaretti / pyKNEEr
  An image analysis workflow for open and reproducible research on femoral knee cartilage
  ☆33Updated 10 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated this week
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 8 months ago
• uncbiag / OAI_analysis_2
  Image analysis approaches to analyze the OAI magnetic resonance images
  ☆24Updated 4 months ago
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆16Updated 3 years ago
• BioMedIA / python-irtk
  Cython based wrapper for IRTK
  ☆10Updated 9 years ago
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆120Updated this week
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 3 years ago