Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
☆73Nov 16, 2022Updated 3 years ago
Alternatives and similar repositories for rivuletpy
Users that are interested in rivuletpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆218Sep 29, 2026Updated 2 weeks ago
- Documentations of BigNeuron Project progress☆24Feb 3, 2016Updated 10 years ago
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆42Sep 26, 2025Updated last year
- Structure-Aware Image Segmentation with Homotopy Warping☆14Sep 19, 2023Updated 3 years ago
- Centerline Extraction, Skeletonization Methods, and Interbranch/Pore Segment Measurements.☆20Nov 2, 2014Updated 11 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neuron…☆79Sep 29, 2026Updated 2 weeks ago
- ☆16Nov 2, 2016Updated 9 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- ☆16Jul 4, 2021Updated 5 years ago
- ☆12Mar 25, 2022Updated 4 years ago
- Implementation of the DeepVesselNet deep learning network☆156Jul 7, 2023Updated 3 years ago
- ☆15Dec 4, 2024Updated last year
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- A collection of tools for manipulation of morphological features in patient-specific geometries☆33Sep 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Neuronal Morphology Analysis Tool☆109Feb 26, 2025Updated last year
- Segmentation of blood vessel from CTA scan using bone subtraction and an iterative thresholding seeking algorithm☆12Apr 9, 2021Updated 5 years ago
- Extract brain and remove skulls from brain CT and CTA images☆35Jul 3, 2023Updated 3 years ago
- ☆18Oct 13, 2023Updated 3 years ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆31Jul 19, 2021Updated 5 years ago
- ☆16Jul 20, 2021Updated 5 years ago
- ☆298Feb 14, 2024Updated 2 years ago
- Automating Model Generation For Image-Based Cardiac Flow Simulation☆15May 29, 2025Updated last year
- This repository contains the implementation for our work "Learning Topological Interactions for Multi-Class Medical Image Segmentation", …☆84Feb 19, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- U-net based CNN for segmenting blood vessel and thereafter removal of vessels from fundus image☆13Jul 13, 2020Updated 6 years ago
- The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Co…☆201Aug 30, 2021Updated 5 years ago
- An interactive software to extract vessel centerline☆66Jun 2, 2026Updated 4 months ago
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated last year
- ☆22Feb 22, 2024Updated 2 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆59Mar 11, 2024Updated 2 years ago
- Discrete Morse-based pipeline for neuron tracing on tracer injection and single-neuron data sets.☆14Jan 14, 2021Updated 5 years ago
- ☆13May 1, 2025Updated last year
- Deep 3D Vessel Segmentation based on Cross Transformer Network☆22Aug 10, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12May 20, 2022Updated 4 years ago
- A software to edit, model and mesh vascular networks from centerlines.☆37Feb 28, 2024Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- This is a release code of the paper "Fuzzy Attention Neural Network to Tackle Discontinuity in Airway Segmentation"☆18May 5, 2023Updated 3 years ago
- Official repository of MICCAI 2022 Parse challenge☆15Jul 22, 2023Updated 3 years ago
- ImageJ core data model☆13Updated this week
- ☆16Aug 26, 2019Updated 7 years ago