itsasimiqbal / DeNeRDLinks
High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning
☆17Updated 3 years ago
Alternatives and similar repositories for DeNeRD
Users that are interested in DeNeRD are comparing it to the libraries listed below
Sorting:
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆52Updated 5 months ago
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆33Updated 5 months ago
- ☆18Updated 3 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Brainways☆21Updated 2 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 10 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 4 years ago
- motion correction☆17Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- ☆52Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Fast, volumetric cell detection. In development.☆20Updated 2 weeks ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 6 years ago
- ☆10Updated 2 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆24Updated 7 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago
- Histology processing☆71Updated 2 months ago
- Calcium imaging inter-session alignment☆13Updated 3 weeks ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Updated 3 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- ☆41Updated 4 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year