itsasimiqbal / DeNeRD
High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning
☆17Updated 2 years ago
Alternatives and similar repositories for DeNeRD:
Users that are interested in DeNeRD are comparing it to the libraries listed below
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- ☆34Updated 3 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated 11 months ago
- ☆17Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated last year
- Revealing neural correlates of behavior without behavioral measurements☆14Updated 5 years ago
- DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.☆24Updated 11 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆64Updated 5 years ago
- ☆45Updated 4 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆46Updated last year
- motion correction☆16Updated 2 years ago
- ☆18Updated 3 years ago
- Histology processing☆64Updated 11 months ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆49Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆36Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 3 months ago
- Schemata and libraries for neuroscientific data☆20Updated 3 months ago
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆28Updated 8 months ago
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 4 years ago
- Analyze neuroscience data in the cloud☆19Updated 5 months ago
- Region Of Interest Classification and Tracking☆16Updated this week
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆24Updated 5 years ago
- ☆33Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- pipeline for volumetric cell segmentation☆12Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆70Updated 2 months ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated 6 years ago