High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning
☆18Feb 21, 2022Updated 4 years ago
Alternatives and similar repositories for DeNeRD
Users that are interested in DeNeRD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Developing a Brain Atlas through Deep Learning☆53Aug 9, 2025Updated 11 months ago
- An alpha playground for a web-based labeling tool for DLC☆16Jun 9, 2020Updated 6 years ago
- ☆14Sep 2, 2020Updated 5 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Various scripts to support deeplabcut and what to do afterwards!☆163Jul 1, 2025Updated last year
- a Python API to record video & system timestamps from Imaging Source USB cameras☆72Feb 21, 2023Updated 3 years ago
- [eLife 2023] Code for "Contrasting action and posture coding with hierarchical deep neural network models of proprioception"☆16Dec 23, 2024Updated last year
- NWB extension to store pose estimation data☆17Jul 18, 2026Updated last week
- [NeurIPS 2022] DMAP: a Distributed Morphological Attention Policy for Learning to Locomote with a Changing Body☆20May 9, 2026Updated 2 months ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆14Jul 15, 2020Updated 6 years ago
- [Cell 2024]: Code for Task-driven neural network models predict neural dynamics of proprioception by Marin Vargas* and Bisi* et al.☆19Mar 25, 2024Updated 2 years ago
- Code for Cadena, S. A, et al. (2019). Deep convolutional models improve predictions of macaque V1 responses to natural images. Plos Compu…☆16Apr 24, 2019Updated 7 years ago
- Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.☆15Sep 17, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Revealing neural correlates of behavior without behavioral measurements☆18Nov 18, 2019Updated 6 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆54Jun 1, 2025Updated last year
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- R Scripts to analyze deep lab cut point data and related data☆72Jan 25, 2023Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- perspective-correct VR for freely moving animals engine☆17Mar 7, 2023Updated 3 years ago
- Coding course materials for Brain-like computation and intelligence☆17Apr 16, 2026Updated 3 months ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Jul 20, 2026Updated last week
- Anatomical space conventions made easy.☆12Jul 14, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆122May 22, 2026Updated 2 months ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 4 years ago
- Docker container for running DeepLabCut 2.0, 2.1 (linux support only). Now, DLC main supports 2.2+☆50Sep 22, 2021Updated 4 years ago
- A Python package to download neuronal morphologies☆17Jul 14, 2026Updated 2 weeks ago
- ☆20Dec 8, 2022Updated 3 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Python package for analyzing behavioral data for Brain Observatory: Visual Behavior☆26Jul 3, 2026Updated 3 weeks ago
- DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.☆25Jun 1, 2026Updated last month
- MATLAB utility to switch between Anaconda environments☆20Jan 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- Official codebase for MammAlps☆30Jun 5, 2025Updated last year
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆201Oct 3, 2024Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- We turn natural language descriptions of behaviors into machine-executable code☆237Jun 30, 2025Updated last year
- Programing and Data Analysis for Modern Neuroscience - Spring 2020☆12Oct 19, 2020Updated 5 years ago
- [ECCV 2024] "Elucidating the Hierarchical Nature of Behavior with Masked Autoencoders"☆29Nov 13, 2025Updated 8 months ago