Alternatives and similar repositories for opentile

Users that are interested in opentile are comparing it to the libraries listed below

• filippocastelli / pyometiff
  OME-TIFF IO in python
  ☆23Updated 6 months ago
• InsightSoftwareConsortium / ITKIOOMEZarrNGFF
  ITK IO for images stored in OME-Zarr format.
  ☆11Updated last month
• labsyspharm / ome-tiff-pyramid-tools
  Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
  ☆17Updated 2 months ago
• chanzuckerberg / napari-hub
  Discover, install, and share napari plugins
  ☆53Updated this week
• imjoy-team / kaibu
  Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.
  ☆35Updated 7 months ago
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆43Updated 2 months ago
• allen-cell-animated / agave
  ☆52Updated this week
• AllenCellModeling / czifile
  czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
  ☆15Updated 2 weeks ago
• PolusAI / bfio
  Interface to the Bioformats Java library
  ☆13Updated 3 months ago
• ome / omero-ms-zarr
  Experimental micro-service for implementing the Zarr spec over HTTP
  ☆18Updated 3 weeks ago
• bigdataprocessor / bigdataprocessor2
  ☆23Updated last month
• 4DNucleome / PartSeg
  Tool for segmentation in bioimaging
  ☆35Updated last week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 7 months ago
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆103Updated 5 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆61Updated 3 weeks ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆59Updated 4 years ago
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆28Updated last year
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆140Updated last week
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 2 months ago
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆51Updated this week
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆54Updated 2 months ago
• mobie / mobie-viewer-fiji
  ☆39Updated last week
• haesleinhuepf / napari-assistant
  ☆33Updated 6 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated 2 years ago
• SarderLab / Histo-cloud
  ☆21Updated last month
• ilastik / tiktorch
  Tiktorch
  ☆12Updated 3 months ago
• manzt / simple-zarr-server
  serve Zarr datasets via HTTP
  ☆31Updated 2 years ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆40Updated this week
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last month
• michaellee1 / CellSeg
  ☆24Updated 2 years ago