imi-bigpicture / opentileLinks
Python library for reading tiles from wsi tiff-files.
☆16Updated 2 months ago
Alternatives and similar repositories for opentile
Users that are interested in opentile are comparing it to the libraries listed below
Sorting:
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆15Updated 2 weeks ago
- Discover, install, and share napari plugins☆52Updated last month
- Tiktorch☆12Updated this week
- OME-TIFF IO in python☆23Updated 3 months ago
- ☆49Updated this week
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- A library to facilitate machine learning on multi-dimensional images.☆83Updated last week
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆58Updated 4 years ago
- Tool for segmentation in bioimaging☆33Updated this week
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated 3 weeks ago
- ☆37Updated last month
- ☆22Updated 2 weeks ago
- Block-wise task scheduling for large nD volumes.☆32Updated 3 months ago
- Interface to the Bioformats Java library☆13Updated this week
- Easily read and write ome-tiff images in python☆27Updated last year
- GPU-accelerated Image Processing library for Python☆48Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆40Updated 2 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆58Updated 2 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆44Updated 5 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last month
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆135Updated last month
- Repository of model architectures and network weights used for CellMap segmentations.☆14Updated 6 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆38Updated this week
- ☆17Updated 3 months ago
- TiffSlide - cloud native openslide-python replacement based on tifffile☆103Updated last month
- imaging demos☆9Updated 2 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆29Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- A dataset for loading zarr files to be used in machine learning training pipelines☆34Updated last month
- Python module for registering and fusing multi-view microscopy data☆23Updated 4 months ago