imi-bigpicture / opentileLinks
Python library for reading tiles from wsi tiff-files.
☆16Updated last month
Alternatives and similar repositories for opentile
Users that are interested in opentile are comparing it to the libraries listed below
Sorting:
- ITK IO for images stored in OME-Zarr format.☆11Updated 4 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆17Updated 5 months ago
- Discover, install, and share napari plugins☆54Updated 3 weeks ago
- Tool for segmentation in bioimaging☆35Updated this week
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Updated 4 years ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 5 months ago
- High quality visualization for volumetric image data☆54Updated this week
- Interface to the Bioformats Java library☆13Updated 3 weeks ago
- OME-TIFF IO in python☆24Updated 9 months ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 2 months ago
- A whole-slide image reader for TensorFlow☆24Updated last month
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 9 months ago
- Easily read and write ome-tiff images in python☆28Updated last year
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Updated last year
- Python package for deep learning based image to image transformation☆53Updated last month
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Updated last month
- serve Zarr datasets via HTTP☆31Updated 2 years ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆20Updated last month
- TiffSlide - cloud native openslide-python replacement based on tifffile☆103Updated 7 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆47Updated this week
- The RPC library used in ImJoy.☆25Updated last year
- ☆24Updated 2 years ago
- native Python dataclasses for the OME data model☆65Updated this week
- Raw format to OME-TIFF converter☆56Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 10 months ago
- GPU-accelerated Image Processing library for Python☆52Updated this week
- Tiktorch☆12Updated 5 months ago
- ☆41Updated last week