imi-bigpicture / opentile
Python library for reading tiles from wsi tiff-files.
☆16Updated 3 weeks ago
Alternatives and similar repositories for opentile:
Users that are interested in opentile are comparing it to the libraries listed below
- OME-TIFF IO in python☆21Updated last week
- Easily read and write ome-tiff images in python☆27Updated 11 months ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 2 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆14Updated 3 weeks ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated last week
- imaging demos☆9Updated 2 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆34Updated 2 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- ☆23Updated last year
- Raw format to OME-TIFF converter☆50Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆39Updated this week
- Resources for teaching/preparing to teach bioimage analysis☆56Updated 2 weeks ago
- A 3D interactivity toolbox for napari☆34Updated this week
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆60Updated 4 years ago
- Discover, install, and share napari plugins☆51Updated 3 weeks ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated last month
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆20Updated 5 months ago
- Tiktorch☆12Updated 3 weeks ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 3 years ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆12Updated 2 years ago
- ☆24Updated last week
- Python project containing Ice remoting code for OMERO☆23Updated last week
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- ☆21Updated last month
- ☆20Updated 2 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago