Alternatives and similar repositories for FISH_Processing

Users that are interested in FISH_Processing are comparing it to the libraries listed below

• UFISH-Team / U-FISH
  Deep learning based spot detection for FISH images.
  ☆25Updated last month
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆68Updated last year
• beliveau-lab / PaintSHOP_pipeline
  A scalable machine learning pipeline for probe specificity prediction.
  ☆14Updated last year
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆72Updated last week
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• swetabiox / Bioimage-Analysis-Resources
  A collection of resources on bioimage analysis and related tools and techniques
  ☆14Updated 2 years ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆149Updated 2 weeks ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 11 months ago
• haesleinhuepf / bia-bob
  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
  ☆127Updated 2 months ago
• peng-lab / BaSiCPy
  ☆85Updated 7 months ago
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆17Updated 4 months ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last month
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆58Updated last year
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆152Updated 2 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated 2 years ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last month
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated 9 months ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆77Updated 2 months ago
• mobie / mobie-viewer-fiji
  ☆39Updated this week
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆47Updated 9 months ago
• royerlab / inTRACKtive
  Interactive visualization and sharing of cell tracking data in the browser
  ☆40Updated this week
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆148Updated 2 weeks ago
• allen-cell-animated / timelapse-colorizer
  A web-based, time-series visualizer for tracked segmented data.
  ☆12Updated this week
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆93Updated last month
• KerenLab / CellSighter
  ☆34Updated last year
• aafkegros / Blender_for_Biologists_2023
  ☆39Updated last year
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆135Updated 3 weeks ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆70Updated last week
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 4 years ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated last week