A collection of resources on bioimage analysis and related tools and techniques
☆14Apr 28, 2023Updated 2 years ago
Alternatives and similar repositories for Bioimage-Analysis-Resources
Users that are interested in Bioimage-Analysis-Resources are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Mar 30, 2026Updated 2 weeks ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- ☆14Jan 26, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This repository supports the BENDER series of videos for the MICCAI Education Challenge, 2022.☆13Oct 6, 2025Updated 6 months ago
- ☆14Jan 25, 2024Updated 2 years ago
- Python package that uses colorspace-based segmentation to analyze histopathology images.☆13Feb 7, 2024Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 4 months ago
- ☆12Feb 23, 2026Updated last month
- Repo for a workshops and presentations about ROS2 and Python☆12Mar 14, 2025Updated last year
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- A napari plugin for counting organoids from brightfield microscopy images with deep learning☆14Mar 27, 2026Updated 2 weeks ago
- Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem☆19May 27, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Block-wise operations for large nD volumes☆46Apr 1, 2026Updated last week
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 9 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 10 months ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- Image processing tool focusing on biological applications☆14Jul 18, 2025Updated 8 months ago
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆31Mar 25, 2026Updated 2 weeks ago
- ☆17Jul 8, 2024Updated last year
- A plugin for LLM that enables proper plugin management when installed via uv tool☆34Mar 11, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 2 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated 2 weeks ago
- Python package for deep learning based image to image transformation