A collection of resources on bioimage analysis and related tools and techniques
☆14Apr 28, 2023Updated 3 years ago
Alternatives and similar repositories for Bioimage-Analysis-Resources
Users that are interested in Bioimage-Analysis-Resources are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Python package that uses colorspace-based segmentation to analyze histopathology images.☆13Feb 7, 2024Updated 2 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- ☆12Feb 23, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repo for a workshops and presentations about ROS2 and Python☆12Jun 13, 2026Updated 2 months ago
- An LTI tool provider to run Numbas exams☆11Updated this week
- ☆14Jan 26, 2021Updated 5 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 8 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆16Updated this week
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 2 months ago
- bioacoustics package: detect and extract automatically acoustic features in audio recordings☆15Feb 8, 2020Updated 6 years ago
- Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem☆17May 27, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Jun 30, 2025Updated last year
- This repository supports the BENDER series of videos for the MICCAI Education Challenge, 2022.☆16May 13, 2026Updated 3 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆20Aug 19, 2026Updated last week
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆18Nov 10, 2022Updated 3 years ago
- Image processing tool focusing on biological applications☆14Jul 18, 2025Updated last year
- ☆17Jul 8, 2024Updated 2 years ago
- Pipeline for spectrograms creation and Birdnet detection for your Audiomoth sessions☆17May 15, 2023Updated 3 years ago
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Compilation of a series of resources, readings, and tutorials for getting started in R. This workshop was designed for undergraduate rese…☆11Jul 25, 2025Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated last month
- Python package for deep learning based image to image transformation☆54May 1, 2026Updated 4 months ago
- A 3D-printed morse key with precise movement and a simple and compact design☆22Oct 21, 2018Updated 7 years ago
- 3D shape analysis using deep learning☆32Oct 8, 2025Updated 10 months ago
- A napari plugin for counting organoids from brightfield microscopy images with deep learning☆15Aug 21, 2026Updated last week
- A plugin for LLM that enables proper plugin management when installed via uv tool☆35Jul 26, 2026Updated last month
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Jul 10, 2026Updated last month
- Open source Python library for building bioimage analysis pipelines☆212Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a tool for using surfaces to explore volumetric data in napari☆22Jun 13, 2026Updated 2 months ago
- Antibody structure prediction model for sampling conformational ensembles☆20Apr 14, 2026Updated 4 months ago
- IsUMap is a tool for manifold learning, dimension reduction and data visualization☆24Jan 30, 2026Updated 7 months ago
- Algorithm for round cells identification in the brightfield microscopy images.☆22Aug 19, 2023Updated 3 years ago
- Python and ImageJ scripts designed to track single cells and analyze fluorescence☆15Dec 16, 2021Updated 4 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆26Jun 3, 2026Updated 2 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆48Jul 16, 2024Updated 2 years ago