Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
☆30Jul 13, 2021Updated 5 years ago
Alternatives and similar repositories for ViFi
Users that are interested in ViFi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GenePattern Python Library☆11Jan 26, 2024Updated 2 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 7 months ago
- ☆22Feb 5, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆30May 19, 2017Updated 9 years ago
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 3 years ago
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 9 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- HiFi error modeler and simulator with ploidy☆12Feb 12, 2026Updated 6 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆44Jul 6, 2021Updated 5 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆11Jul 13, 2019Updated 7 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Data exploration with multiple machine learning algorithms☆14Nov 28, 2021Updated 4 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 weeks ago
- scID☆14Oct 21, 2021Updated 4 years ago
- ☆10Oct 6, 2020Updated 5 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆162Jun 18, 2024Updated 2 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis☆16Jun 29, 2025Updated last year
- Static Huffman coding☆10Apr 3, 2017Updated 9 years ago
- ☆16May 8, 2023Updated 3 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 4 months ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated 2 years ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆14Feb 15, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 4 years ago
- ☆17Mar 3, 2023Updated 3 years ago
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 7 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 2 months ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆16Aug 20, 2021Updated 4 years ago