dputhier / pygtftkLinks
A python package and a set of shell commands to handle GTF files
☆50Updated 3 weeks ago
Alternatives and similar repositories for pygtftk
Users that are interested in pygtftk are comparing it to the libraries listed below
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆36Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 3 weeks ago
- visual analysis of your VCF files☆39Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated last year
- for visual evaluation of read support for structural variation☆56Updated last year
- gatk4 RNA variant calling pipeline☆59Updated 2 weeks ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- mtDNA Variant Caller☆35Updated last year
- Gene Fusion Visualiser☆51Updated 3 years ago
- Evolutionary Transcriptomics with R☆47Updated this week
- Version II of Mandalorion☆32Updated 7 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Interactive multiscale visualization for structural variation in human genomes☆71Updated 2 weeks ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Updated 7 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 4 years ago
- new repo☆28Updated 4 years ago
- A catalogue of available long read sequencing data analysis tools☆85Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Updated 2 years ago