dputhier / pygtftk
A python package and a set of shell commands to handle GTF files
☆47Updated 9 months ago
Alternatives and similar repositories for pygtftk:
Users that are interested in pygtftk are comparing it to the libraries listed below
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated last month
- visual analysis of your VCF files☆31Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- Digenome-toolkit ver2.☆16Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆48Updated 3 weeks ago
- Master of Pores 2☆23Updated 3 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- ☆33Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Long read to rMATS☆31Updated last year
- TEspeX - pipeline for Transposable Elements expression quantification☆20Updated last year
- New version of JACUSA -> 2.0☆24Updated this week
- ☆23Updated 3 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆84Updated this week
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆68Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆58Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆34Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆64Updated 3 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆37Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 5 months ago
- Error correction of ONT transcript reads☆59Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago