dputhier / pygtftkLinks
A python package and a set of shell commands to handle GTF files
☆49Updated last year
Alternatives and similar repositories for pygtftk
Users that are interested in pygtftk are comparing it to the libraries listed below
Sorting:
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- for visual evaluation of read support for structural variation☆55Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- Gene Fusion Visualiser☆51Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 10 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- Structural variant merging tool☆55Updated last year
- mtDNA Variant Caller☆34Updated 10 months ago
- ☆51Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆54Updated 2 weeks ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- TIDDIT - structural variant calling☆77Updated 6 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Long read to rMATS☆32Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ☆38Updated 2 years ago