UMCUGenetics / IAP
Illumina analysis pipeline
☆14Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for IAP
- A Strategy for Building and Using a Human Reference Pangenome☆70Updated 4 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated 9 months ago
- RNASeq pipeline☆36Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 6 months ago
- Tools for the analysis of structural variation in genomes☆77Updated 8 months ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆92Updated 2 weeks ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- CRyPTIC data processing pipelines☆31Updated 4 months ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆44Updated 4 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆104Updated 2 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 9 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆80Updated 10 months ago
- SV detection tool for nanopore sequence reads☆89Updated 2 months ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- Comparison of multiple long read datasets☆108Updated 2 weeks ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated last year
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Bayesian genotyper for structural variants☆126Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated 2 weeks ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago