Alternatives and similar repositories for IAP:

Users that are interested in IAP are comparing it to the libraries listed below

• UMCUGenetics / RNASeq
  RNASeq pipeline
  ☆36Updated 5 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆81Updated last week
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated 10 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆87Updated 5 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆127Updated 3 years ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆52Updated 3 months ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆44Updated 7 months ago
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆92Updated 3 months ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆62Updated 3 years ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆85Updated last year
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 2 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆96Updated 9 months ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆55Updated 7 years ago
• phasegenomics / FALCON-Phase
  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
  ☆74Updated 4 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆95Updated last year
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 2 weeks ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago
• tommyau / bamclipper
  Remove primer sequence from BAM alignments by soft-clipping
  ☆31Updated 5 years ago
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆70Updated 4 years ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆90Updated 8 months ago
• cancerit / BRASS
  Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
  ☆57Updated 7 months ago
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 3 years ago
• PubuduSaneth / cnvScan
  CNV screening and annotation tool
  ☆24Updated 8 years ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆93Updated 10 months ago
• OpenGene / MrBam
  Query Mutated Reads from a Bam
  ☆26Updated 6 years ago