UMCUGenetics / IAPLinks
Illumina analysis pipeline
☆14Updated 5 years ago
Alternatives and similar repositories for IAP
Users that are interested in IAP are comparing it to the libraries listed below
Sorting:
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- RNASeq pipeline☆36Updated 5 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆98Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆94Updated 8 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆86Updated 3 weeks ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆153Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Converts bam or cram files to fastq format and does quality control.☆27Updated last week
- CRyPTIC data processing pipelines☆34Updated last year
- Analysis pipelines for genomic sequencing data☆68Updated last month
- Tools for processing and analyzing structural variants.☆153Updated 3 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆70Updated 5 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆85Updated 9 months ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Tools for the analysis of structural variation in genomes☆80Updated last year
- Platypus Variant Caller☆108Updated last year
- ☆107Updated last month
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- ☆82Updated 6 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- Tools for querying and analysis of genomic data☆27Updated 7 months ago