A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT
☆15Feb 5, 2026Updated last month
Alternatives and similar repositories for GenoTools
Users that are interested in GenoTools are comparing it to the libraries listed below
Sorting:
- ☆13Sep 7, 2022Updated 3 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆16Apr 8, 2021Updated 4 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- ☆27Sep 24, 2020Updated 5 years ago
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 2 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆58Dec 16, 2025Updated 3 months ago
- ☆24Dec 10, 2018Updated 7 years ago
- Pipelines for NGS, imputation, gwas, ...☆29Dec 18, 2019Updated 6 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 6 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆10Sep 26, 2019Updated 6 years ago
- Analysis scripts from the paper "Eight thousand years of natural selection in Europe".☆11Nov 19, 2015Updated 10 years ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- ☆13Mar 22, 2022Updated 3 years ago
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago
- Open-source plugins of Hiplot (ORG) visualization platform.☆21May 4, 2025Updated 10 months ago
- ☆16Feb 11, 2022Updated 4 years ago
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆23Updated this week
- analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)☆12Jun 16, 2016Updated 9 years ago
- collection of bioinformatic scripts☆32May 3, 2024Updated last year
- blupADC:An useful tool for animal and plant breeding☆31Nov 22, 2024Updated last year
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- ☆20Oct 24, 2023Updated 2 years ago
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆15Aug 16, 2024Updated last year
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- Imputation-beagle-tutorial☆38Jun 2, 2022Updated 3 years ago
- ☆11Mar 16, 2022Updated 4 years ago
- A Scientometric Review of Genome Wide Association Studies☆40Jun 30, 2023Updated 2 years ago
- ☆13Feb 17, 2022Updated 4 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Oct 14, 2017Updated 8 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated last month
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆44Jul 27, 2023Updated 2 years ago
- Sanity check Variant Call Format (VCF) files.☆37Mar 18, 2016Updated 10 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated 8 months ago
- R package 📦 for handy functions when working with GWAS (summary) data☆17Jul 29, 2019Updated 6 years ago
- An R HTMLWidget for making interactive manhattan plots for GWAS.☆20Aug 1, 2015Updated 10 years ago
- Code for pre-processing data for the paper: Rest-activity rhythms across the lifespan: cross-sectional findings from the U.S.-representat…☆13Aug 21, 2023Updated 2 years ago
- Software for "Secure genome-wide association analysis using multiparty computation", Nature Biotechnology, 2018☆20Aug 16, 2018Updated 7 years ago