GP2code / GenoToolsLinks
A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT
☆15Updated last week
Alternatives and similar repositories for GenoTools
Users that are interested in GenoTools are comparing it to the libraries listed below
Sorting:
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 8 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Updated 10 months ago
- Readme☆10Updated 5 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- Quality control steps for GWAS☆24Updated 2 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated last week
- ☆25Updated last year
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- ☆30Updated last year
- Cross-population fine-mapping☆38Updated 8 months ago
- TWAS-pipeline☆22Updated 4 years ago
- An accurate and efficient HLA imputation method.☆26Updated 2 years ago
- ☆62Updated 3 years ago
- ☆23Updated 4 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆41Updated last year
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated 11 months ago
- Website for the precision medicine workshop☆45Updated last month
- ☆10Updated 3 months ago
- Script used to identify de novo variants from sequencing data.☆12Updated 8 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 2 years ago
- ☆23Updated 4 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆30Updated 8 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago