☆39Jul 5, 2023Updated 3 years ago
Alternatives and similar repositories for ML-iAMR
Users that are interested in ML-iAMR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Some examples to analyze mass spectrometry data using MALDIquant☆17Oct 13, 2022Updated 3 years ago
- GeneBac: a modular framework for predicting antibiotic resistance from DNA sequence.☆18Jan 3, 2024Updated 2 years ago
- 16S pipeline using qiime2 created with snakemake☆12Jul 13, 2026Updated last week
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆11Sep 26, 2019Updated 6 years ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated 3 weeks ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 2 weeks ago
- Antibiotic resistance prediction in minutes☆119Mar 27, 2026Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated 2 years ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- ☆11Mar 11, 2025Updated last year
- Permutation Tests for Linear Models☆16Nov 21, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Nov 12, 2023Updated 2 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Apr 25, 2022Updated 4 years ago
- Agent that summarises literature and answers academic questions using the arXiv API☆22Jan 31, 2026Updated 5 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Deep learning-based prediction of regulatory genome sequences☆12Apr 20, 2020Updated 6 years ago
- automatic generation of a stormwater drainage network model based on open source data☆10Dec 1, 2023Updated 2 years ago
- 多机器人协作中央控制软件,湖南大学。基于网络摄像头视觉定位,多机器人的协作完成分拣搬运,自动充电等工作。☆11Jun 4, 2020Updated 6 years ago
- Mycobacterial pipeline☆11Sep 11, 2025Updated 10 months ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Nextflow pipeline for running synteny analysis.☆20Jun 25, 2026Updated 3 weeks ago
- Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)☆83Nov 2, 2021Updated 4 years ago
- Phylogenetic analyses code☆10Feb 12, 2020Updated 6 years ago
- This repository contains code for the AOP-Wiki XML-to-RDF conversion and guidance to deploy a Virtuoso SPARQL endpoint Docker image that …☆12Updated this week
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)☆20May 12, 2025Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 4 months ago
- Facemash is a website created by Mark Zuckerberg in 2003, where people had to choose between two photos. This is clone of facemash in the…☆10Feb 13, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- ☆13Sep 6, 2022Updated 3 years ago
- A community collection of bioinformatic analyses for anyone to learn and adapt☆17Updated this week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 2, 2024Updated 2 years ago
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated 2 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 3 years ago
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago