Profluent-AI / CRISPR-Cas-AtlasLinks
An atlas of CRISPR-Cas systems from systematic genome mining
☆25Updated 5 months ago
Alternatives and similar repositories for CRISPR-Cas-Atlas
Users that are interested in CRISPR-Cas-Atlas are comparing it to the libraries listed below
Sorting:
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated last month
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆50Updated 2 months ago
- Genomic language model predicts protein co-regulation and function☆85Updated 10 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- Feature map and function annotation of Proteins☆34Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Code for LazyAF pipeline☆22Updated last year
- ☆29Updated last year
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 8 months ago
- Multi-Species Codon Optimization Engine☆27Updated 6 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Scripts to generate and analyze afdb clusters☆11Updated 2 years ago
- Cross-protein transfer learning for variant effect prediction☆20Updated 2 years ago
- Long disorder consensus predictor☆18Updated 4 months ago
- ☆21Updated 3 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- DeepECtransformer☆29Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated 2 years ago
- ☆86Updated 2 years ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆77Updated 4 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆27Updated 2 months ago
- ☆30Updated 2 years ago