softnanolab / boileroomLinks
Protein prediction models implemented with Modal
☆25Updated this week
Alternatives and similar repositories for boileroom
Users that are interested in boileroom are comparing it to the libraries listed below
Sorting:
- Protein Engineering via Exploration of an Energy Landscape☆79Updated last week
- Kuhlman Lab Installation of AlphaFold3☆34Updated last week
- ☆71Updated 6 months ago
- A Unified Approach to Protein Engineering☆42Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆54Updated 4 months ago
- Metrics for our protein design competitions.☆35Updated 11 months ago
- Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models☆29Updated 10 months ago
- Neural Iterative Selection-Expansion using LASErMPNN and Boltz-2x☆25Updated 2 months ago
- Efficient manipulation of protein structures in Python☆58Updated 2 weeks ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆23Updated last year
- ☆39Updated last year
- ☆44Updated last year
- Extension of ThermoMPNN for double mutant predictions☆43Updated 2 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆38Updated this week
- ☆88Updated 2 months ago
- Explicit crosslinks in AlphaFold 3☆23Updated 6 months ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆39Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆67Updated 10 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆54Updated 3 weeks ago
- ☆20Updated 11 months ago
- Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention☆54Updated 3 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆37Updated 3 months ago
- ☆29Updated this week
- ☆36Updated last year
- code for IDR binding paper 2025☆56Updated 7 months ago
- High-throughput framework for running molecular simulations for METL☆20Updated 3 weeks ago
- Structure prediction of alternative protein conformations☆79Updated 7 months ago
- Some Rosetta Scripts that allow for various simple tasks☆14Updated 5 years ago