☆23Aug 14, 2026Updated this week
Alternatives and similar repositories for denovo_benchmarks
Users that are interested in denovo_benchmarks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated last month
- ☆15Oct 16, 2023Updated 2 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Aug 5, 2026Updated last week
- ☆23Mar 15, 2024Updated 2 years ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆26Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Collection of peptide de novo sequencing algorithms by BEAM labs☆31May 24, 2026Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆82Updated this week
- ☆14Jun 26, 2026Updated last month
- Proteomics Mass Spectrometry Datasets for Machine Learning☆22Aug 16, 2024Updated 2 years ago
- Paper collection about de novo peptide Sequening☆24Feb 5, 2025Updated last year
- ☆45Jan 20, 2026Updated 6 months ago
- ☆12Jun 13, 2024Updated 2 years ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated 2 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆56Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆46Feb 27, 2026Updated 5 months ago
- ☆18Oct 16, 2025Updated 10 months ago
- PIA - Protein Inference Algorithms☆25Updated this week
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 3 years ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆36Nov 10, 2025Updated 9 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Aug 1, 2026Updated 2 weeks ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Updated this week
- A label free quantification tool.☆20Jan 13, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- An easy-to-use and interactive web application for FragPipe☆15Mar 8, 2026Updated 5 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- Find hot data sets in your area (of research)!☆16Dec 20, 2018Updated 7 years ago
- Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.☆27May 21, 2019Updated 7 years ago
- Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein seq…☆19Oct 4, 2022Updated 3 years ago
- ☆14Aug 12, 2021Updated 5 years ago
- chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models☆17Nov 20, 2025Updated 8 months ago
- ☆15Oct 21, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆43Aug 1, 2025Updated last year
- PyCharm plugin to execute python code☆12Jul 29, 2025Updated last year
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆16Oct 6, 2023Updated 2 years ago
- ☆20May 20, 2025Updated last year
- ☆10Apr 13, 2025Updated last year
- ☆21Oct 17, 2025Updated 10 months ago
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 4 months ago