☆23Jun 11, 2026Updated last week
Alternatives and similar repositories for denovo_benchmarks
Users that are interested in denovo_benchmarks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Paper collection about de novo peptide Sequening☆24Feb 5, 2025Updated last year
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jun 5, 2026Updated last week
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Jun 11, 2026Updated last week
- Collection of peptide de novo sequencing algorithms by BEAM labs☆31May 24, 2026Updated 3 weeks ago
- ☆15Oct 16, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Proteomics Mass Spectrometry Datasets for Machine Learning☆22Aug 16, 2024Updated last year
- ☆23Mar 15, 2024Updated 2 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆53Updated this week
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- ☆18Oct 16, 2025Updated 8 months ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆36Nov 10, 2025Updated 7 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆189Jun 8, 2026Updated last week
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆79Jun 6, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A simple Java library for DSBmobile☆20May 20, 2022Updated 4 years ago
- An easy-to-use and interactive web application for FragPipe☆14Mar 8, 2026Updated 3 months ago
- Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.☆27May 21, 2019Updated 7 years ago
- Benchmark for Data-Efficient Image Classification☆25Apr 11, 2023Updated 3 years ago
- ☆14Aug 12, 2021Updated 4 years ago
- ☆15Oct 21, 2025Updated 7 months ago
- Democratizing ML in proteomics☆53May 6, 2026Updated last month
- ☆44Feb 27, 2026Updated 3 months ago
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆16Oct 6, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PyCharm plugin to execute python code☆12Jul 29, 2025Updated 10 months ago
- ☆10Apr 13, 2025Updated last year
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 2 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆78Apr 24, 2026Updated last month
- A simple wrapper for lmdb. Support dict-like operations.☆23Apr 20, 2023Updated 3 years ago
- ☆14Jul 12, 2021Updated 4 years ago
- Convert your PDF files into word documents or different image formats locally without uploading some servers unknown.☆19Jun 2, 2023Updated 3 years ago
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- A label free quantification tool.☆20Jan 13, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast and flexible semi-supervised learning for peptide detection in Python☆52May 30, 2026Updated 2 weeks ago
- Collection of C++ containers extracted from LLVM☆26May 11, 2021Updated 5 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Mono-repo for protein utilities.☆21Oct 26, 2021Updated 4 years ago
- ☆23Sep 18, 2025Updated 9 months ago
- An open-source Python package to unify raw MS data accession and storage.☆32Jun 2, 2026Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated last month