soedinglab / pdbxLinks
pdbx is a parser module in python for structures of the protein data bank in the mmcif format
☆29Updated last year
Alternatives and similar repositories for pdbx
Users that are interested in pdbx are comparing it to the libraries listed below
Sorting:
- ☆30Updated 6 months ago
- Python package to manage protein structures and their annotations☆44Updated last year
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆58Updated 2 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- Physical energy function for protein sequence design☆33Updated 2 years ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- ☆88Updated last year
- Contact map alignment☆41Updated 4 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆24Updated 5 months ago
- ☆31Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆36Updated 3 years ago
- ☆21Updated 2 years ago
- Fragment binding prediction with ColabFold☆38Updated last week
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 4 months ago
- Fast and accurate protein structure prediction☆56Updated 10 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Library containing code to manipulate mmCIF and PDB files☆36Updated last week
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆30Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 5 months ago
- Deep ResNet-based protein contact prediction☆20Updated 5 years ago
- ☆47Updated 10 months ago
- A high performance drop-in replacement for Biotite's PDBFile.☆39Updated 5 months ago
- An open-source library for the analysis of protein interactions.☆32Updated 3 years ago
- GTalign, high-performance protein structure alignment, superposition and search☆51Updated 3 months ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- Predict the structure of immune receptor proteins☆57Updated last year
- AlphaLink: Integrating crosslinking MS data into OpenFold☆71Updated last year
- ☆25Updated 2 years ago