pdbx is a parser module in python for structures of the protein data bank in the mmcif format
☆31Aug 9, 2024Updated last year
Alternatives and similar repositories for pdbx
Users that are interested in pdbx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 6 months ago
- ☆16Dec 10, 2024Updated last year
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15May 24, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Remote protein homology detection suite.☆627Aug 12, 2025Updated 11 months ago
- Contact Prediction ToolKit☆22Updated this week
- ☆22Dec 15, 2022Updated 3 years ago
- wwPDB PDBx/mmCIF Dictionary☆10Jul 9, 2026Updated last week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated 2 years ago
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated 9 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆28May 26, 2025Updated last year
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆24Jan 25, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a toolbox for the manipulation, modelling and analysis of molecular structures☆28Nov 27, 2025Updated 7 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆24Oct 31, 2025Updated 8 months ago
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆17Jun 19, 2021Updated 5 years ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆36Jul 28, 2022Updated 3 years ago
- Colorblind-friendly, perceptually uniform palettes for pymol☆21Jan 25, 2021Updated 5 years ago
- ☆30May 15, 2025Updated last year
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆104Jun 9, 2025Updated last year
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 4 months ago
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 4 years ago
- A generative latent variable model for biological sequence families.☆256Mar 15, 2022Updated 4 years ago
- Scripts and data to run AbDesign as described in Tools for protein science 2021☆13Nov 4, 2020Updated 5 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆99Aug 29, 2023Updated 2 years ago
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆55Apr 20, 2025Updated last year
- ☆12May 3, 2025Updated last year
- Rifdock Library for Conformational Search☆174May 16, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆18Mar 13, 2024Updated 2 years ago
- ☆18May 11, 2026Updated 2 months ago
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆96Dec 29, 2023Updated 2 years ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆124Jan 21, 2023Updated 3 years ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 2 years ago
- 🧬 - Data management and modeling framework based on EnzymeML.☆26Jul 1, 2026Updated 2 weeks ago