soedinglab / pdbxLinks
pdbx is a parser module in python for structures of the protein data bank in the mmcif format
☆26Updated 10 months ago
Alternatives and similar repositories for pdbx
Users that are interested in pdbx are comparing it to the libraries listed below
Sorting:
- Python package to manage protein structures and their annotations☆43Updated last year
- Some scripts that I keep using over and over.☆18Updated 5 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- ☆30Updated last month
- ☆40Updated 9 months ago
- PyPEF – Pythonic Protein Engineering Framework☆24Updated 3 weeks ago
- ☆30Updated last year
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆28Updated last year
- ☆26Updated last month
- Python package to atom map, correct and suggest enzymatic reactions☆38Updated last year
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆45Updated 2 weeks ago
- Ultra-fast in-silico structure mutation☆34Updated 2 months ago
- Modeling the effects of mutations in proteins using PyRosetta☆26Updated 7 years ago
- A domain parser for Alphafold models☆38Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆21Updated 3 weeks ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- Contact map alignment☆16Updated 7 years ago
- ☆15Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last month
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- ☆36Updated this week
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 3 years ago
- The DSSP building software☆44Updated last year
- Physical energy function for protein sequence design☆30Updated 2 years ago
- Python Toolbox For Rosetta Silent Files Processing☆16Updated 6 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆35Updated 3 years ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated last month
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆66Updated 10 months ago
- Modelling of Large Protein Complexes☆37Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated last month