soedinglab / pdbx
pdbx is a parser module in python for structures of the protein data bank in the mmcif format
☆22Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for pdbx
- ☆21Updated 5 months ago
- A domain parser for Alphafold models☆32Updated 11 months ago
- Interactive Python notebooks for PDBe API training☆45Updated last week
- Python package to manage protein structures and their annotations☆40Updated 8 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆48Updated 3 months ago
- ☆27Updated 6 months ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆32Updated 2 years ago
- ☆33Updated last month
- ☆20Updated last year
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆36Updated 2 months ago
- Predict the structure of immune receptor proteins☆47Updated 2 weeks ago
- Fast and accurate protein structure prediction☆49Updated last year
- ☆15Updated last year
- ☆74Updated last month
- Ultra-fast in-silico structure mutation☆32Updated last year
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆19Updated 10 months ago
- Graph Network for protein-protein interface including language model features☆25Updated 7 months ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆18Updated 3 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆48Updated 3 months ago
- Source code and examples for AlphaFold Unmasked☆41Updated this week
- ☆24Updated 3 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆24Updated 7 months ago
- ☆35Updated 10 months ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆15Updated 10 months ago
- ☆45Updated 3 weeks ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆33Updated 4 years ago
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆25Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆25Updated last month
- Deep ResNet-based protein contact prediction☆19Updated 4 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆32Updated 2 years ago