amp91 / PeptideModelsLinks
Code for peptide ligand design with machine learning models.
☆30Updated last year
Alternatives and similar repositories for PeptideModels
Users that are interested in PeptideModels are comparing it to the libraries listed below
Sorting:
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆27Updated 2 years ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆73Updated 10 months ago
- Collection of tools to calculate properties of natural or synthetic peptides and proteins.☆54Updated last month
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 8 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43Updated last year
- ☆21Updated last year
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆47Updated 2 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated 2 years ago
- Fast and accurate molecular docking with an AI pose scoring function☆42Updated last year
- Deep learning tools for peptide substrate prediction and generation☆35Updated 2 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆41Updated 7 months ago
- ☆35Updated last month
- code for SeqDance/ESMDance, biophysics-informed protein language models☆51Updated last week
- Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models☆35Updated last year
- Structure prediction of alternative protein conformations☆80Updated 11 months ago
- Fragment-based Molecular Expansion☆27Updated 2 years ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆30Updated 4 months ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆86Updated 3 months ago
- Modelling protein conformational landscape with Alphafold☆54Updated 5 months ago
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆31Updated last year
- ☆73Updated 10 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61Updated 8 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- ☆54Updated 8 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆87Updated 4 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆37Updated 10 months ago
- Docking Tool Benchmarking Workflow☆25Updated last year
- Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term☆29Updated last year
- High-throughput molecular docking with multiple targets and ligands using Vina series engines☆33Updated 5 years ago
- Code for ApoDock☆21Updated 9 months ago