Code for peptide ligand design with machine learning models.
☆35Dec 8, 2024Updated last year
Alternatives and similar repositories for PeptideModels
Users that are interested in PeptideModels are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Heuristic energy-based cyclic peptide design☆15Feb 21, 2025Updated last year
- ☆21Oct 31, 2024Updated last year
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆18Jul 10, 2026Updated last month
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 7 years ago
- pains filter using rdktit☆11Mar 17, 2015Updated 11 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆36May 15, 2026Updated 2 months ago
- ☆10Apr 1, 2024Updated 2 years ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆30Jul 7, 2023Updated 3 years ago
- OnionNet-2 is constructed based on convolutional neural network (CNN) to predict the protein-ligand binding affinity.☆26Mar 2, 2024Updated 2 years ago
- To run metadynamics simulations using openMM (based on Peter Eastman's script)☆13Mar 18, 2019Updated 7 years ago
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- ☆10Oct 27, 2024Updated last year
- Going through a setting up a basic cheminformatics pipeline for the target EGFR☆19Apr 1, 2025Updated last year
- A molecule generative model used interaction fingerprint (docking pose) as constraints.☆15Feb 13, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆16Jan 2, 2024Updated 2 years ago
- antimicrobial peptide prediction in R☆36Dec 17, 2024Updated last year
- Useful Collective Variables for OpenMM☆18May 9, 2024Updated 2 years ago
- List of papers about Peptide research using Deep Learning☆46Jun 16, 2026Updated last month
- Benchmarking active learning protocols for ligand binding affinity prediction☆13Feb 4, 2024Updated 2 years ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆98Nov 5, 2025Updated 9 months ago
- ☆15Nov 20, 2024Updated last year
- ☆15Jul 7, 2024Updated 2 years ago
- Transformer Based Language Model for Peptide Property Prediction☆57Aug 2, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Benchmarking Cofolding Methods for Molecular Glue Ternary Structure Prediction☆16Oct 29, 2025Updated 9 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆53Dec 3, 2024Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 3 years ago
- ET-Tox☆13Oct 4, 2024Updated last year
- Fast protein domain structure embedding+search tool☆31Sep 21, 2025Updated 10 months ago
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 7 months ago
- ☆23Mar 28, 2024Updated 2 years ago
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆16Apr 24, 2024Updated 2 years ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Feb 29, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Jul 5, 2022Updated 4 years ago
- Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides☆34May 10, 2025Updated last year
- Deep learning + physical modeling for 3D protein metal ion binding prediction☆14Feb 24, 2025Updated last year
- ☆80Feb 26, 2024Updated 2 years ago
- Deep generative modeling of protein structural ensembles☆41May 27, 2026Updated 2 months ago
- Learning Protein-Ligand Properties with Atomic Environment Vectors☆10Apr 19, 2024Updated 2 years ago
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Dec 7, 2021Updated 4 years ago