BioLiP2 database curation and web interface
☆34Jun 19, 2025Updated last year
Alternatives and similar repositories for mmCIF2BioLiP
Users that are interested in mmCIF2BioLiP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jun 19, 2026Updated last month
- A benchmark for 3D biomolecular structure prediction models☆69May 11, 2025Updated last year
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- Deep learning + physical modeling for 3D protein metal ion binding prediction☆14Feb 24, 2025Updated last year
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆18Jan 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆101Feb 14, 2024Updated 2 years ago
- Datasets for P2Rank project. https://github.com/rdk/p2rank☆31Nov 8, 2024Updated last year
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆52Oct 31, 2025Updated 9 months ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 11 months ago
- ☆11Mar 28, 2024Updated 2 years ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 6 months ago
- scripts to find PBD structures for cancer driver proteins☆31Feb 27, 2026Updated 5 months ago
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆99Aug 7, 2026Updated last week
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- It's a package for evaluation of predicted poses, right?☆78Jul 13, 2026Updated last month
- Public version for Distance-AF☆32Aug 17, 2025Updated 11 months ago
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆83Jul 21, 2026Updated 3 weeks ago
- ☆14Jun 5, 2024Updated 2 years ago
- ☆33Feb 5, 2025Updated last year
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆334Oct 6, 2025Updated 10 months ago
- ☆35Dec 15, 2023Updated 2 years ago
- Code and notebook for our paper "Assessing interaction recovery of predicted protein-ligand poses"☆23Oct 2, 2024Updated last year
- ☆12Oct 9, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- workflow used to prepare PPB-Affinity database☆34Aug 22, 2024Updated last year
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Jul 24, 2026Updated 3 weeks ago
- ☆58Dec 15, 2025Updated 8 months ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 3 years ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆27May 16, 2025Updated last year
- ☆19Oct 26, 2024Updated last year
- A Light-Weight And Interpretable Molecular Docking Model☆26Oct 23, 2024Updated last year
- A light-weight PyTorch extension for equivariant deep learning☆18Feb 20, 2025Updated last year
- ☆46Jan 10, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆185Updated this week
- A program fror inter-protein contact prediction from structures of interacting proteins☆21Jun 1, 2024Updated 2 years ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆86Jul 23, 2026Updated 3 weeks ago
- Clustering of SES virtual probes for pocket generation and ranking via Isolation Forest☆14Mar 22, 2023Updated 3 years ago
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆25Apr 10, 2026Updated 4 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- ☆16Jan 10, 2023Updated 3 years ago