Alternatives and similar repositories for diff_BUM_HMM:

Users that are interested in diff_BUM_HMM are comparing it to the libraries listed below

• goodarzilab / SwitchFinder
  ☆16Updated 8 months ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• mhorlacher / rbpnet
  ☆18Updated last year
• ShenLab / gMVP
  ☆20Updated 2 years ago
• debbiemarkslab / MuE
  A package for making MuE observation models in Edward2.
  ☆13Updated 3 years ago
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆10Updated 5 years ago
• evanseitz / squid-nn
  surrogate quantitative interpretability for deepnets
  ☆21Updated 2 weeks ago
• eternagame / DegScore
  Arnie-based DegScore tool.
  ☆25Updated 2 years ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆13Updated 4 years ago
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆16Updated 3 years ago
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆29Updated 6 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 2 months ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆25Updated last year
• visze / sequence_cnn_models
  ☆13Updated 2 months ago
• sinc-lab / miRe2e
  ☆14Updated last year
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆18Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated 2 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆35Updated 5 months ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆17Updated last week
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆43Updated 2 weeks ago
• cbg-ethz / netics
  NetICS: network-based integration of multi-omics data for prioritizing cancer genes
  ☆15Updated 3 years ago
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated last year
• ma-compbio / SPEID
  ☆14Updated 7 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• regev-lab / interpretable-splicing-model
  Interpretable splicing model
  ☆20Updated last year
• liu-bioinfo-lab / EPCOT
  ☆21Updated last year
• altoslabs / perturbench
  ☆25Updated 3 months ago