Example project for integrating igv.js and flask
☆26May 17, 2025Updated 9 months ago
Alternatives and similar repositories for igv.js-flask
Users that are interested in igv.js-flask are comparing it to the libraries listed below
Sorting:
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49May 7, 2019Updated 6 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated last week
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 4 months ago
- Website to analyze conflicting assertions in ClinVar☆19Jan 24, 2026Updated last month
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 7 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Jan 27, 2020Updated 6 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- use the noise☆15Apr 15, 2020Updated 5 years ago
- ☆16Dec 19, 2016Updated 9 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Oct 4, 2024Updated last year
- Software for creating and comparing genome fingerprints.☆11Jun 30, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- ☆13Apr 18, 2022Updated 3 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- Github Gists from the command line. On MAC OSX, it (will be) an Alfred Workflow!☆11Dec 20, 2020Updated 5 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆709Feb 25, 2026Updated last week
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Angular.js app for Open Targets Platform☆15Apr 28, 2021Updated 4 years ago
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated 4 months ago
- ☆19Jul 28, 2025Updated 7 months ago