gatk-workflows / gatk4-germline-snps-indelsLinks
Workflows for germline short variant discovery with GATK4
☆139Updated 4 years ago
Alternatives and similar repositories for gatk4-germline-snps-indels
Users that are interested in gatk4-germline-snps-indels are comparing it to the libraries listed below
Sorting:
- VarDict☆201Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆160Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- Gene fusion detection and visualization☆131Updated 3 years ago
- Annotation and Ranking of Structural Variation☆276Updated 2 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆174Updated last year
- Software program for checking sample matching for NGS data☆137Updated last year
- Structural variation and indel detection by local assembly☆250Updated 3 months ago
- A tool set for short variant discovery in genetic sequence data.☆203Updated 4 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- A tool for estimating repeat sizes☆200Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆208Updated 4 years ago
- A structural variation pipeline for short-read sequencing☆199Updated this week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆201Updated 4 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 7 months ago
- ABRA2☆95Updated 3 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆232Updated 3 years ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆126Updated 2 years ago
- a lightweight bam file depth statistical tool☆159Updated last year
- VarDict Java port☆136Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆108Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Updated last year
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year