SpatialTranscriptomicsResearch / st_spot_detectorLinks
A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.
☆25Updated 3 years ago
Alternatives and similar repositories for st_spot_detector
Users that are interested in st_spot_detector are comparing it to the libraries listed below
Sorting:
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated this week
- ☆48Updated 7 years ago
- An R package for handling and analysing imaging mass cytometry data☆30Updated last month
- Bring your single-cell data to life☆93Updated 2 weeks ago
- ☆57Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Updated 7 years ago
- An R package for performing cell typing in SMI and other single cell data☆48Updated 8 months ago
- ☆53Updated 2 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 2 weeks ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52Updated 3 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- ☆14Updated 2 weeks ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆47Updated 4 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆84Updated 3 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆30Updated 9 months ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆93Updated this week
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- Image Mass Cytometry analysis pipeline☆26Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- ☆53Updated 3 weeks ago
- Unified access to several second-generation deconvolution methods☆91Updated last month
- From geospatial to spatial -omics☆100Updated 2 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Updated 2 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago