SpatialTranscriptomicsResearch / st_spot_detector
A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.
☆23Updated 2 years ago
Alternatives and similar repositories for st_spot_detector:
Users that are interested in st_spot_detector are comparing it to the libraries listed below
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆37Updated 3 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆82Updated 3 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 7 months ago
- ☆47Updated 2 years ago
- ☆25Updated 9 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- An R package for handling and analysing imaging mass cytometry data☆24Updated 4 months ago
- Tools for analyzing Slide-seq data☆31Updated last year
- ☆54Updated last year
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- Image Mass Cytometry analysis pipeline☆25Updated last month
- .h5mu files interface for Seurat☆28Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- ☆38Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 9 months ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆27Updated 4 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Spatial transcriptomics analyses and decoding in R☆18Updated last month
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- ☆46Updated 2 years ago
- ☆46Updated 11 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 3 weeks ago
- ☆25Updated 5 years ago
- ☆58Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago