SpatialTranscriptomicsResearch / st_spot_detector
A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.
☆23Updated 2 years ago
Alternatives and similar repositories for st_spot_detector:
Users that are interested in st_spot_detector are comparing it to the libraries listed below
- ☆51Updated 2 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆38Updated 4 months ago
- ☆54Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 3 weeks ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated last week
- ☆46Updated 3 weeks ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- Tools for analyzing Slide-seq data☆31Updated last year
- An R package for handling and analysing imaging mass cytometry data☆26Updated 6 months ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- iterative clustering pipeline of big single cell datasets.☆30Updated this week
- An R package for performing cell typing in SMI and other single cell data☆34Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆28Updated 4 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year
- ☆18Updated this week
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ☆13Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- ☆46Updated 2 years ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- .h5mu files interface for Seurat☆29Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆24Updated 3 weeks ago
- ☆36Updated 7 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year