Alternatives and similar repositories for st_spot_detector

Users that are interested in st_spot_detector are comparing it to the libraries listed below

• Nanostring-Biostats / SpatialDecon
  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…
  ☆40Updated 2 months ago
• SpatialTranscriptomicsResearch / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆83Updated 4 years ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆27Updated 3 weeks ago
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆56Updated last year
• pachterlab / LP_2021
  ☆49Updated last month
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆51Updated 7 years ago
• lilab-bcb / cirrocumulus
  Bring your single-cell data to life
  ☆87Updated last week
• ebecht / MCPcounter
  ☆59Updated 3 years ago
• nolanlab / CODEX
  Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
  ☆48Updated 3 years ago
• atarashansky / self-assembling-manifold
  The Self-Assembling-Manifold (SAM) algorithm.
  ☆44Updated last year
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 5 years ago
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆44Updated 3 years ago
• maggiecrow / MetaNeighbor
  ☆49Updated 7 years ago
• jbergenstrahle / STUtility
  ☆52Updated 2 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆43Updated 3 weeks ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆37Updated 2 years ago
• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆85Updated 4 months ago
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆77Updated 3 years ago
• Nanostring-Biostats / GeomxTools
  Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…
  ☆43Updated last week
• AllonKleinLab / SPRING_dev
  ☆69Updated last year
• cellgeni / batchbench
  ☆47Updated 3 years ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated last month
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• LungCellAtlas / HLCA
  ☆60Updated 2 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆34Updated last month
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆38Updated 2 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆106Updated 2 years ago
• mohanbolisetty / CellView
  Simple App to visualize single cell datasets
  ☆20Updated 7 years ago