SpatialTranscriptomicsResearch / st_spot_detectorLinks
A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.
☆25Updated 3 years ago
Alternatives and similar repositories for st_spot_detector
Users that are interested in st_spot_detector are comparing it to the libraries listed below
Sorting:
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated 6 months ago
- ☆57Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- ☆53Updated 2 years ago
- Bring your single-cell data to life☆89Updated this week
- An R package for handling and analysing imaging mass cytometry data☆28Updated last month
- An R package for performing cell typing in SMI and other single cell data☆43Updated 6 months ago
- ☆51Updated 3 weeks ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆51Updated 3 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- A novel unsupervised batch removal framework, called iMAP, based on neural networks.☆35Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 9 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆59Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last month
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 weeks ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆28Updated last year
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆45Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- ☆19Updated 6 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- ☆56Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- ☆48Updated 7 years ago
- ☆33Updated last month
- ☆48Updated last month
- Image Mass Cytometry analysis pipeline☆26Updated 6 months ago