SpatialTranscriptomicsResearch / st_spot_detectorLinks
A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.
☆24Updated 2 years ago
Alternatives and similar repositories for st_spot_detector
Users that are interested in st_spot_detector are comparing it to the libraries listed below
Sorting:
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆39Updated last month
- ☆52Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆83Updated 4 years ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- ☆56Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆54Updated last year
- An R package for handling and analysing imaging mass cytometry data☆26Updated this week
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆29Updated 5 years ago
- An R package for performing cell typing in SMI and other single cell data☆37Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 11 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆43Updated 3 years ago
- Tools for analyzing Slide-seq data☆31Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆63Updated 5 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated 6 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- ☆18Updated 3 months ago
- ☆19Updated 5 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆18Updated 2 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆15Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- ☆48Updated last week
- Image Mass Cytometry analysis pipeline☆25Updated 2 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆32Updated last week
- ☆41Updated this week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- ☆28Updated 3 months ago