Alternatives and similar repositories for multiMiR

Users that are interested in multiMiR are comparing it to the libraries listed below

• icbi-lab / Immunophenogram
  ☆41Updated 7 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 9 months ago
• YosefLab / ImpulseDE2
  ☆38Updated 2 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆30Updated 5 months ago
• FunGeST / Palimpsest
  An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
  ☆71Updated last year
• Aufiero / circRNAprofiler
  ☆10Updated 3 months ago
• SamBuckberry / RUN-WGCNA
  Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
  ☆28Updated 10 years ago
• fpbarthel / GLASS
  GLASS consortium
  ☆41Updated 5 years ago
• ToledoEM / msigdf
  Molecular Signatures Database (MSigDB) in a tidy data frame
  ☆26Updated 3 weeks ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago
• markowetzlab / CINSignatureQuantification
  Quantifying copy number signatures from absolute copy number profiles
  ☆24Updated last month
• sjczheng / EpiDISH
  This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…
  ☆53Updated last month
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 6 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 6 years ago
• nasqar / ClusterProfShinyGSEA
  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
  ☆17Updated 5 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated this week
• BioinformaticsFMRP / TCGAWorkflow
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
  ☆47Updated 2 years ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆63Updated 6 months ago
• caravagnalab / mobster
  Model-based tumour subclonal deconvolution using population genetics
  ☆33Updated this week
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 11 months ago
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆36Updated 3 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆42Updated 5 months ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆45Updated 2 months ago
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 4 months ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• gersteinlab / exceRpt
  Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
  ☆23Updated 2 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆62Updated 4 years ago