patidarr / annotation-pipelineLinks
☆10Updated 8 years ago
Alternatives and similar repositories for annotation-pipeline
Users that are interested in annotation-pipeline are comparing it to the libraries listed below
Sorting:
- ☆12Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- ☆11Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 10 months ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 8 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated last month
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago