patidarr / annotation-pipelineLinks
☆10Updated 8 years ago
Alternatives and similar repositories for annotation-pipeline
Users that are interested in annotation-pipeline are comparing it to the libraries listed below
Sorting:
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- ☆13Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Fast fusion detection using kallisto☆80Updated 2 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ☆15Updated 7 years ago
- ☆11Updated 7 years ago