Alternatives and similar repositories for DO-MS

Users that are interested in DO-MS are comparing it to the libraries listed below

• Vitek-Lab / MSstats
  R package - MSstats
  ☆87Updated last month
• fgcz / rawrr
  Access Orbitrap data in R lang using C# .NET assembly - bioconductor package
  ☆58Updated 2 months ago
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆37Updated last year
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆47Updated 4 months ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Updated 4 years ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• lgatto / MSnbase
  Base Classes and Functions for Mass Spectrometry and Proteomics
  ☆135Updated 2 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆46Updated last week
• ipb-halle / MetFragR
  R package for MetFrag
  ☆23Updated 8 years ago
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆17Updated last week
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆46Updated 2 months ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 3 months ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆64Updated 7 months ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆12Updated 4 years ago
• Vitek-Lab / MSstatsPTM
  Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments
  ☆12Updated last month
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated 2 years ago
• rickhelmus / patRoon
  Workflow solutions for mass-spectrometry based non-target analysis.
  ☆68Updated this week
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 5 months ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆30Updated last year
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆48Updated 2 years ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆34Updated 2 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated last month
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated last month
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆28Updated 3 weeks ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆49Updated 2 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆66Updated last year
• DorresteinLaboratory / XCMS3_FeatureBasedMN
  ☆14Updated 3 years ago