An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
☆26May 3, 2026Updated 5 months ago
Alternatives and similar repositories for DO-MS
Users that are interested in DO-MS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- Construction, quantification, and visualization of proteoform families☆14Dec 16, 2024Updated last year
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Aug 19, 2026Updated last month
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆31Mar 19, 2026Updated 6 months ago
- Package to analyze Mass Spec Data☆13Aug 24, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆62Feb 10, 2026Updated 8 months ago
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics☆18Oct 11, 2018Updated 8 years ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- ☆15Jan 27, 2022Updated 4 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆87Jan 6, 2022Updated 4 years ago
- The repo for LFQ-Analyst☆32Aug 7, 2024Updated 2 years ago
- Quantitative proteomics workflow☆16Sep 30, 2022Updated 4 years ago
- Various Cheminformatic, Curation and Mass Spectrometry Functions☆15Jan 15, 2021Updated 5 years ago
- ☆13Nov 26, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package - MSstats☆102Oct 4, 2026Updated last week
- Proteomics Toolset for Integrative Data Analysis☆27Oct 7, 2025Updated last year
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Oct 5, 2026Updated last week
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 5 years ago
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 6 years ago
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆24Sep 7, 2026Updated last month
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆483Sep 16, 2026Updated 3 weeks ago
- Proteomics search & quantification so fast that it feels like magic☆312Updated this week
- Differential Expression Analysis tool box R lang package for omics data☆48Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Data Processing Kitchen Sink for proteomics data☆15Jun 15, 2026Updated 3 months ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Updated this week
- Python package for investigating the structural context of PTMs☆28Jan 9, 2025Updated last year
- Python client for PRIDE Archive Rest API.☆42Jul 29, 2026Updated 2 months ago
- Low level infrastructure to handle MS spectra☆48Sep 14, 2026Updated 3 weeks ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Sep 17, 2020Updated 6 years ago
- Repository for Ruff, King et al. Molecular grammars of predicted intrinsically disordered regions that span the human proteome☆20Dec 29, 2025Updated 9 months ago
- pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.☆25Jan 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆131Updated this week
- Interfacing R's Spectra package with the Python world.☆13May 12, 2026Updated 5 months ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆32Oct 5, 2022Updated 4 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆134Mar 23, 2026Updated 6 months ago
- Report processing and protein quantification for MS-based proteomics☆56Jun 29, 2023Updated 3 years ago
- HUPO-PSI Standardized peptidoform notation☆27Aug 14, 2026Updated last month
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated 2 years ago