An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
☆27Mar 17, 2025Updated last year
Alternatives and similar repositories for DO-MS
Users that are interested in DO-MS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆28Mar 19, 2026Updated 3 weeks ago
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- Construction, quantification, and visualization of proteoform families☆14Dec 16, 2024Updated last year
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 6 months ago
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆61Feb 10, 2026Updated last month
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics☆18Oct 11, 2018Updated 7 years ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- ☆15Jan 27, 2022Updated 4 years ago
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- Package to analyze Mass Spec Data☆12Aug 24, 2023Updated 2 years ago
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆20Mar 25, 2026Updated 2 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Jan 6, 2022Updated 4 years ago
- Python client for PRIDE Archive Rest API.☆38Feb 6, 2026Updated 2 months ago
- Quantitative proteomics workflow☆15Sep 30, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Various Cheminformatic, Curation and Mass Spectrometry Functions☆15Jan 15, 2021Updated 5 years ago
- A cross-platform proteomics data analysis suite☆284Updated this week
- ☆12Nov 26, 2024Updated last year
- R package - MSstats☆94Apr 2, 2026Updated last week
- NIHPO's Synthetic Health Data Platform☆12Apr 4, 2024Updated 2 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆30Jul 28, 2025Updated 8 months ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- ☆20Jan 20, 2026Updated 2 months ago
- Differential Expression Analysis tool box R lang package for omics data☆47Apr 2, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 5 years ago
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated 10 months ago
- Proteomics search & quantification so fast that it feels like magic☆279Mar 31, 2026Updated last week
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- Data Processing Kitchen Sink for proteomics data☆13Jan 13, 2026Updated 2 months ago
- Proteomics Toolset for Integrative Data Analysis☆26Oct 7, 2025Updated 6 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 8 months ago
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆18Aug 19, 2025Updated 7 months ago
- Python package for investigating the structural context of PTMs☆28Jan 9, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.☆25Jan 11, 2025Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated last month
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- Report processing and protein quantification for MS-based proteomics☆52Jun 29, 2023Updated 2 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆128Mar 23, 2026Updated 2 weeks ago
- Algorithms for Working With and Modifying Polygon Boundaries☆15Feb 7, 2023Updated 3 years ago
- Linux programming environment course in Chinese☆12Nov 19, 2017Updated 8 years ago