Alternatives and similar repositories for DO-MS

Users that are interested in DO-MS are comparing it to the libraries listed below

• Vitek-Lab / MSstats
  R package - MSstats
  ☆88Updated last month
• fgcz / rawrr
  Access Orbitrap data in R lang using C# .NET assembly - bioconductor package
  ☆58Updated 2 months ago
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆37Updated last year
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆46Updated last month
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆18Updated last week
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 4 months ago
• lgatto / MSnbase
  Base Classes and Functions for Mass Spectrometry and Proteomics
  ☆136Updated 3 months ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Updated 4 years ago
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆46Updated 2 weeks ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• Vitek-Lab / MSstatsPTM
  Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments
  ☆13Updated 2 months ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆47Updated 4 months ago
• ipb-halle / MetFragR
  R package for MetFrag
  ☆23Updated 8 years ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆64Updated 7 months ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆28Updated last month
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 6 months ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆12Updated 4 years ago
• statOmics / MSqRob
  Robust statistical inference for quantitative LC-MS proteomics
  ☆34Updated 3 years ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 3 months ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆50Updated 2 years ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆40Updated 9 months ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• MonashProteomics / FragPipe-Analyst
  Documentation is available here:
  ☆20Updated last week
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 2 months ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• smith-chem-wisc / MetaNetwork
  ☆11Updated 2 years ago
• rickhelmus / patRoon
  Workflow solutions for mass-spectrometry based non-target analysis.
  ☆68Updated last week
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆58Updated 4 months ago