Center-for-Health-Data-Science / git-GitHub-workshop
This repository is used for the HeaDS git and GitHub workshop 2023
☆16Updated last month
Related projects ⓘ
Alternatives and complementary repositories for git-GitHub-workshop
- ☆10Updated 6 months ago
- An introductory course to Python by the Center of Health Data Science (University of Copenhagen)☆16Updated 3 weeks ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆44Updated this week
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆123Updated 2 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆102Updated last year
- scDIOR: Single cell data IO softwaRe☆134Updated 2 years ago
- ☆22Updated 8 years ago
- Single-Cell Clustering Assessment Framework☆93Updated last year
- R package to access DoRothEA's regulons☆133Updated 8 months ago
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆70Updated 3 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆56Updated 8 months ago
- ☆64Updated last year
- bioinformatics plotting and tools☆53Updated 5 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆75Updated 5 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆134Updated 5 months ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆21Updated 2 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆90Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆109Updated this week
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- Java tools for analyzing Drop-seq data☆120Updated 2 weeks ago
- Convert Seurat objects to 10x Genomics Loupe files.☆100Updated 3 weeks ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- machine-readable file format for genomic library sequence and structure☆114Updated 2 weeks ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆110Updated this week
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆88Updated last year
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆66Updated 4 years ago
- Scanpy use cases.☆77Updated 4 years ago
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆49Updated this week
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆81Updated 3 years ago