SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity of each signature in the sample and assigns the probability for each signature to cause a specific mutation type in the sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
☆23Jan 17, 2025Updated last year
Alternatives and similar repositories for SigProfilerSingleSample
Users that are interested in SigProfilerSingleSample are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆81Aug 26, 2026Updated last month
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆188Sep 29, 2026Updated last week
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆53Updated this week
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆122Updated this week
- ☆13Apr 16, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆22Jul 1, 2026Updated 3 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆44Apr 18, 2024Updated 2 years ago
- SV clustering☆32Jul 5, 2021Updated 5 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 7 months ago
- Fragmentase Artifact Detection and Elimination☆13Mar 22, 2022Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- ☆81Jul 12, 2023Updated 3 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 8 months ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆44Aug 14, 2023Updated 3 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 7 years ago
- Search for a set of compatible indexes for your sequencing experiment☆11Sep 6, 2019Updated 7 years ago
- pipeline for dog WGS alignment☆16Jun 27, 2023Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆103Sep 15, 2026Updated 3 weeks ago
- ☆13Sep 24, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Isaac aligner version 4☆18Apr 20, 2026Updated 5 months ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- R package for wrapper functions, preprocessing, NMF and postprocessing☆12Oct 14, 2017Updated 8 years ago
- convert from HDF5 matrix format to txt/tab (tsv) matrix format☆10Aug 3, 2016Updated 10 years ago
- Package to wrangle and visualize genomic data in R☆26Feb 10, 2026Updated 7 months ago
- Template for building a small workflow in Nextflow☆17May 2, 2022Updated 4 years ago
- ☆44Oct 27, 2018Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 11 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 7 years ago
- WisecondorX — An evolved WISECONDOR☆116Jul 1, 2026Updated 3 months ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆27Apr 4, 2023Updated 3 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆17Mar 11, 2024Updated 2 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Aug 31, 2026Updated last month
- Python Distributed Non Negative Tensor Networks☆14Oct 20, 2021Updated 4 years ago