SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity of each signature in the sample and assigns the probability for each signature to cause a specific mutation type in the sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
☆23Jan 17, 2025Updated last year
Alternatives and similar repositories for SigProfilerSingleSample
Users that are interested in SigProfilerSingleSample are comparing it to the libraries listed below
Sorting:
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆75Feb 19, 2026Updated last week
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆177Feb 1, 2026Updated last month
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆52Feb 8, 2026Updated 3 weeks ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆117Feb 8, 2026Updated 3 weeks ago
- ☆12Nov 6, 2023Updated 2 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆21Feb 10, 2026Updated 2 weeks ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Apr 18, 2024Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 2 weeks ago
- ☆76Jul 12, 2023Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- Fast method for inferring cancer clonal population structure from SNV data.☆66Jan 20, 2026Updated last month
- An Expectation-Maximization algorithm to infer mutational signatures☆25Nov 16, 2016Updated 9 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated last month
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Mar 10, 2021Updated 4 years ago
- Package to wrangle and visualize genomic data in R☆26Feb 10, 2026Updated 2 weeks ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 7 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Dec 20, 2022Updated 3 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- ☆14Jul 1, 2025Updated 8 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 4 months ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 2 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Nov 20, 2020Updated 5 years ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerfu…☆10Sep 2, 2021Updated 4 years ago
- R pkg for Hierarchical Dirichlet Process☆82Jul 18, 2023Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Jan 8, 2026Updated last month
- Main repository for Drews et al. (Nature, 2022)☆42Aug 14, 2023Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆86Updated this week
- ☆44Oct 27, 2018Updated 7 years ago
- the MAVISp database for annotations and predictions of variant effects at the protein level☆13Feb 19, 2026Updated last week
- Advanced R 1-day course taught at the University of Cambridge☆11Jul 6, 2018Updated 7 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year