R pkg for Hierarchical Dirichlet Process
☆83Jul 18, 2023Updated 2 years ago
Alternatives and similar repositories for hdp
Users that are interested in hdp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Mar 9, 2026Updated 2 weeks ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆232May 15, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Apr 26, 2020Updated 5 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆180Mar 7, 2026Updated 3 weeks ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆119Feb 8, 2026Updated last month
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated last month
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆64Apr 24, 2025Updated 11 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated 2 months ago
- ASCAT R package☆199Feb 12, 2026Updated last month
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 2 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆158Dec 25, 2025Updated 3 months ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated last month
- GLASS consortium☆42Jun 1, 2020Updated 5 years ago
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 5 months ago
- Main repository for Drews et al. (Nature, 2022)☆43Aug 14, 2023Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 5 years ago
- ☆26Aug 8, 2024Updated last year
- ☆14Oct 9, 2025Updated 5 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated this week
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Mar 23, 2025Updated last year
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Nov 20, 2020Updated 5 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 8 months ago
- R package containing useful functions for mutational signature analysis☆86Mar 16, 2026Updated last week
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆21Dec 4, 2024Updated last year