Roth-Lab / pyclone-viLinks
Fast method for inferring cancer clonal population structure from SNV data.
☆60Updated last month
Alternatives and similar repositories for pyclone-vi
Users that are interested in pyclone-vi are comparing it to the libraries listed below
Sorting:
- ☆39Updated 5 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- ☆78Updated 6 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆50Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆32Updated 5 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last week
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆78Updated 4 months ago
- ☆31Updated last year
- RAGE-seq scripts☆18Updated 4 years ago
- Clinical interpretation of somatic mutations in cancer☆48Updated 7 months ago
- ☆47Updated 2 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- ☆21Updated last week
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated 2 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated last month
- direct comparison of circular and linear RNA expression☆22Updated 4 years ago
- Cellsnake tool main repo☆34Updated last year
- ☆72Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- ☆44Updated 6 years ago