Roth-Lab / pyclone-viLinks
Fast method for inferring cancer clonal population structure from SNV data.
☆57Updated this week
Alternatives and similar repositories for pyclone-vi
Users that are interested in pyclone-vi are comparing it to the libraries listed below
Sorting:
- ☆38Updated 5 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- An R package to time somatic mutations☆62Updated 4 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 5 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- ☆76Updated 4 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 8 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 6 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated last week
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 9 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆77Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆49Updated 3 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 3 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Mutational signature analysis for low statistics SNV data☆65Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Battenberg R package for subclonal copynumber estimation☆91Updated last month
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- ☆45Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Comprehensive analysis of small RNA sequencing data☆33Updated 3 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year