Polyploid-aware, multiscale super-pangenome graph strategy
☆20Oct 29, 2025Updated 10 months ago
Alternatives and similar repositories for Saccharum-pg
Users that are interested in Saccharum-pg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Aug 21, 2026Updated 3 weeks ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆68Jul 29, 2026Updated last month
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated 11 months ago
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆27Feb 23, 2026Updated 6 months ago
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆32Apr 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Telomere compliment tools☆26Nov 17, 2025Updated 10 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 10 months ago
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated 11 months ago
- ☆15May 3, 2024Updated 2 years ago
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆30Jul 29, 2025Updated last year
- ☆15May 3, 2023Updated 3 years ago
- A high-performance, ALL-in-ONE suite for quantitative genetics that unifies genome-wide association studies (GWAS) and genomic selection …☆39Sep 7, 2026Updated last week
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 3 months ago
- A Tool for low Coverage HiFi Data Assembly☆43Dec 27, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆32Apr 22, 2026Updated 4 months ago
- Application of pan-genome for population☆122Oct 26, 2025Updated 10 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆111Jul 23, 2026Updated last month
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 10 months ago
- Mosaic Genome Assembler☆29Updated this week
- A library for running k-mers based GWAS☆129Oct 29, 2024Updated last year
- TQSLE v1.0 released☆10Aug 29, 2023Updated 3 years ago
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆28May 12, 2026Updated 4 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆52Sep 22, 2025Updated 11 months ago
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 3 years ago
- ☆13Jul 8, 2026Updated 2 months ago
- A chromosome-level polyploid phasing scaffolding tool☆19Aug 27, 2026Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Aug 30, 2026Updated 2 weeks ago
- High throughput python tool for mining and analysis of gene duplications.☆17Jul 30, 2026Updated last month
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A rapid and low-memory multiple-genome aligner for closely related genomes☆25Sep 3, 2025Updated last year
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- An integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences.☆23Apr 13, 2026Updated 5 months ago
- ☆33Apr 7, 2025Updated last year
- a software for annotating plant genes☆24Dec 22, 2023Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆25Sep 5, 2024Updated 2 years ago
- ☆43Jan 19, 2024Updated 2 years ago