Alternatives and similar repositories for reutils

Users that are interested in reutils are comparing it to the libraries listed below

• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated 2 years ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆19Updated last year
• danlwarren / RWTY
  R We There Yet?
  ☆32Updated 8 months ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆39Updated last year
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 3 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆75Updated 2 years ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 6 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated 3 months ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆39Updated 10 years ago
• spholmes / F1000_workflow
  ☆43Updated 8 years ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆70Updated last month
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 7 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 3 months ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated 3 weeks ago
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆39Updated 6 years ago
• inodb / 2014-5-metagenomics-workshop
  Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm
  ☆18Updated 11 years ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆39Updated 2 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆33Updated 3 years ago
• jsilve24 / philr
  Phylogenetic Isometric Log Ratio
  ☆19Updated last year
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 4 months ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 7 years ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated last month
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 7 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 10 years ago
• reptalex / phylofactor
  ☆28Updated last year
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated last year