Alternatives and similar repositories for reutils:

Users that are interested in reutils are comparing it to the libraries listed below

• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆18Updated 6 months ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 10 months ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated 2 weeks ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated 11 months ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 years ago
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 3 years ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆36Updated last year
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• gmbecker / genbankr
  ☆19Updated last year
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated 5 months ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• reptalex / phylofactor
  ☆26Updated last year
• nathanhaigh / 2019_EMBL-ABR_Snakemake_webinar
  Scripts and Snakemake pipeline used in the EMBL-ABR webinar
  ☆13Updated 5 years ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆23Updated 3 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated last year
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆17Updated 3 years ago
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 6 years ago
• FredHutch / microbial-rnaseq
  Analysis of RNAseq data from (host-associated) microbial mixtures
  ☆12Updated 5 years ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆18Updated 4 years ago
• js2264 / tidyCoverage
  ☆21Updated 7 months ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 3 months ago
• datacarpentry / rnaseq-data-analysis-ARCHIVED
  ☆10Updated 9 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year