gschofl / reutilsLinks
Talk to the NCBI EUtils
☆22Updated 5 years ago
Alternatives and similar repositories for reutils
Users that are interested in reutils are comparing it to the libraries listed below
Sorting:
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- R interface to the JBrowse 2 Linear Genome View.☆39Updated last year
- Htmlwidgets binding R commands to the BioCircos.js library☆39Updated 6 years ago
- fastqcr: Quality Control of Sequencing Data☆75Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Genomic plot in trellis layout☆41Updated last year
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- R We There Yet?☆31Updated 7 months ago
- Visualization tool for genetic reassortment☆21Updated 2 weeks ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated last year
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 2 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 2 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Tools for visualising microbial community amplicon data☆69Updated 2 weeks ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 11 years ago
- Simple R utilities for working with HMMER☆19Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- flexible pipelines for scalable secretome prediction, R package☆12Updated 6 years ago
- Glimma R package☆50Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ggtree version of plotTree.R☆18Updated 7 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 11 months ago