Sage-Bionetworks / crcscLinks
CRC Subtyping Consortium
☆12Updated 7 years ago
Alternatives and similar repositories for crcsc
Users that are interested in crcsc are comparing it to the libraries listed below
Sorting:
- ☆30Updated 9 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆40Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆28Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- ☆29Updated 6 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- ☆34Updated 5 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆39Updated 2 weeks ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆43Updated 6 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆47Updated 5 months ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- Spatial transcriptomics analyses and decoding in R☆21Updated 3 months ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 2 months ago
- ☆41Updated 4 years ago
- Mouse cell atlas☆59Updated 5 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆25Updated 3 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 5 months ago