A user-friendly tool to screen antimicrobial resistance in fungal genomes
☆18Aug 29, 2025Updated 6 months ago
Alternatives and similar repositories for ChroQueTas
Users that are interested in ChroQueTas are comparing it to the libraries listed below
Sorting:
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Viral (meta)-genome assembly pipeline.☆22Updated this week
- ☆21Nov 13, 2019Updated 6 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆18Nov 20, 2025Updated 3 months ago
- Bacterial surveillance pipeline.☆27Dec 30, 2025Updated 2 months ago
- Influenza data pipeline to automate genotyping assignment☆40Updated this week
- ☆32Jan 27, 2026Updated last month
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Feb 26, 2026Updated last week
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 4 months ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- ☆13Jul 18, 2022Updated 3 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- This is the code repository for CLM-Microbe model.☆12Jul 30, 2025Updated 7 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Feb 20, 2026Updated 2 weeks ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated 2 months ago
- Processes FTIR spectra of natural organic matter by finding exact peak locations, baseline-correcting the peaks, and converting them to r…☆11Aug 29, 2018Updated 7 years ago
- ☆11Nov 17, 2020Updated 5 years ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆14Feb 13, 2026Updated 3 weeks ago
- Software for the Tree-Based Scan Statistic☆14Updated this week
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens…☆11Aug 1, 2023Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆47Apr 3, 2025Updated 11 months ago
- A tool for identification of plant long non-coding RNAs.☆10Aug 8, 2023Updated 2 years ago
- Simple template for running snakemake with R☆12Jan 31, 2023Updated 3 years ago
- Nextstrain build for dengue virus☆13Dec 16, 2025Updated 2 months ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- ☆10Apr 16, 2025Updated 10 months ago
- A deep-learning program, called fast fluorescent identification network (FFI-Net), is designed to fast identify the fluorescent component…☆21Mar 30, 2021Updated 4 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Feb 17, 2025Updated last year
- Code repository for R Data Mining Blueprints, published by Packt☆10Jan 14, 2021Updated 5 years ago
- ☆10Nov 24, 2025Updated 3 months ago
- ☆11Oct 4, 2022Updated 3 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- ☆11Feb 12, 2026Updated 3 weeks ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago