IPython notebooks to teach Genomics and Population Genetics
☆21Feb 13, 2017Updated 9 years ago
Alternatives and similar repositories for genomics-notebooks
Users that are interested in genomics-notebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Nov 2, 2018Updated 7 years ago
- A general-purpose forward-time population genetics simulation environment.☆37Feb 4, 2026Updated 8 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- ☆15Jul 17, 2019Updated 7 years ago
- Streamable FASTA parser.☆14May 18, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Aug 12, 2026Updated last month
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Sequencing analysis pipeline☆16Dec 12, 2025Updated 9 months ago
- Notebooks to introduce biopython☆144Dec 4, 2020Updated 5 years ago
- ☆12May 6, 2021Updated 5 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools used to analyze data from nanopore-based experiments.☆32Feb 1, 2015Updated 11 years ago
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- Protein preparation for MD, made faster and easier !☆15Dec 18, 2023Updated 2 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 10 years ago
- Example code from http://simonsmith.io/writing-react-components-as-commonjs-modules/☆18Jan 21, 2014Updated 12 years ago
- For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml☆39Aug 8, 2019Updated 7 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 8 years ago
- Python for Command Line Oneliners☆19Jan 5, 2015Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆35Feb 20, 2020Updated 6 years ago
- Python for Bioinformatics☆266Oct 1, 2020Updated 6 years ago
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- Automatically install packages when they are missing☆51Mar 23, 2018Updated 8 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- ☆43Apr 20, 2016Updated 10 years ago
- APIs for discovering genomics tools, their metadata and their containers☆35Sep 30, 2026Updated last week
- PyPop: Python for Population Genomics☆25Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Smart progressbar with multiple backends supporting both explicit updating and tqdm-style iterable-wrapping☆10Dec 7, 2016Updated 9 years ago
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 7 years ago
- Workshop bringing together individuals interested in developing curriculum, workflows, and tools to strengthen reproducibility in researc…☆33Jul 12, 2015Updated 11 years ago
- A pipeline for the computational evaluation of RNA-Seq data☆40Sep 10, 2024Updated 2 years ago
- https://bam.iobio.io☆47Aug 26, 2026Updated last month
- An index of open research software☆23Feb 24, 2018Updated 8 years ago
- ropensci cheatsheets☆21May 23, 2018Updated 8 years ago