IPython notebooks to teach Genomics and Population Genetics
☆21Feb 13, 2017Updated 9 years ago
Alternatives and similar repositories for genomics-notebooks
Users that are interested in genomics-notebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library for next generation genomics in Python 3☆18Jun 7, 2018Updated 7 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 5 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Example code from http://simonsmith.io/writing-react-components-as-commonjs-modules/☆18Jan 21, 2014Updated 12 years ago
- Streamable FASTA parser.☆14May 18, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- ☆15Jul 17, 2019Updated 6 years ago
- ☆12Apr 8, 2021Updated 5 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Nov 5, 2025Updated 6 months ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- try dat using docker☆30Mar 14, 2018Updated 8 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Population and Evolutionary Genetics Analysis System☆29Apr 4, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12May 6, 2021Updated 5 years ago
- For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml☆39Aug 8, 2019Updated 6 years ago
- Protein preparation for MD, made faster and easier !☆15Dec 18, 2023Updated 2 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 10 years ago
- MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dom…☆10May 17, 2022Updated 4 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Tools used to analyze data from nanopore-based experiments.☆31Feb 1, 2015Updated 11 years ago
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 7 years ago
- An interactive course on learning genomics/bioinformatics tasks in Linux.☆41Mar 21, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Python for Command Line Oneliners☆19Jan 5, 2015Updated 11 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Python for Bioinformatics☆263Oct 1, 2020Updated 5 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Automatically install packages when they are missing☆51Mar 23, 2018Updated 8 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- PyPop: Python for Population Genomics☆26Updated this week
- density growing clustering☆10Dec 2, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Smart progressbar with multiple backends supporting both explicit updating and tqdm-style iterable-wrapping☆10Dec 7, 2016Updated 9 years ago
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- A pipeline for the computational evaluation of RNA-Seq data☆40Sep 10, 2024Updated last year
- Take two readable streams and return a readable stream with the xor of the two input chunks☆10May 31, 2020Updated 5 years ago
- A Python library for reading and writing PacBio® data files☆41May 21, 2026Updated last week
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago