canzarlab / McSplicerLinks
☆11Updated 3 years ago
Alternatives and similar repositories for McSplicer
Users that are interested in McSplicer are comparing it to the libraries listed below
Sorting:
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆16Updated 3 weeks ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated 3 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- General Use Scripts and Helper functions☆16Updated 7 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Updated 5 years ago
- ☆17Updated last year
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- Motif manipulation functions for R.☆28Updated 2 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆27Updated 7 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ☆11Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆11Updated last month
- binned motif enrichment analysis and visualisation☆40Updated last month
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆12Updated last week
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆12Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆23Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- ☆39Updated 9 months ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 4 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year