canzarlab / McSplicerLinks
☆11Updated 3 years ago
Alternatives and similar repositories for McSplicer
Users that are interested in McSplicer are comparing it to the libraries listed below
Sorting:
- Benchmarking long-read RNA-seq analysis tools☆27Updated 7 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated 6 months ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆18Updated 2 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- General Use Scripts and Helper functions☆16Updated 7 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- simplified cellranger for long-read data☆19Updated last month
- An R package to process and analyze transcriptomic data☆18Updated 3 months ago
- Motif Scan and Enrichment Analysis (MoSEA)☆17Updated 4 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- Transcription Factor Enrichment Analysis☆36Updated 3 weeks ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆28Updated 7 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ☆39Updated 2 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆12Updated 4 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆27Updated 2 years ago
- ☆18Updated last year
- ☆23Updated 4 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- ☆16Updated last year
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆17Updated last year
- 🧪 Optimized protocol for m6A-SAC-seq☆11Updated 3 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- binned motif enrichment analysis and visualisation☆41Updated last week