Alternatives and similar repositories for McSplicer:

Users that are interested in McSplicer are comparing it to the libraries listed below

• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆14Updated 2 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆14Updated this week
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆29Updated 3 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• songlab-cal / scquint
  ☆16Updated 8 months ago
• gersteinlab / FunSeq2
  A flexible framework to annotate and prioritize cancer somatic mutations.
  ☆8Updated 7 years ago
• YeoLab / gscripts
  General Use Scripts and Helper functions
  ☆16Updated 6 years ago
• ohlerlab / RiboseQC
  Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
  ☆17Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• eandresleon / miRNA-mRNA_Integration
  A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq
  ☆11Updated 5 years ago
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆25Updated 3 years ago
• JiaqiLiZju / Nvwa
  ☆34Updated 2 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆23Updated 7 months ago
• wenweixiong / MARVEL
  ☆45Updated 6 months ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆15Updated 9 months ago
• Genentech / Isosceles
  The Isoforms from Single-Cell; Long-read Expression Suite
  ☆24Updated last month
• comprna / MoSEA
  Motif Scan and Enrichment Analysis (MoSEA)
  ☆16Updated 4 years ago
• JSuryatenggara / ChIP-AP
  An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
  ☆21Updated 4 months ago
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆14Updated last year
• wangjuan001 / hicplus
  ☆10Updated 3 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆32Updated 3 years ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆16Updated 4 months ago
• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆18Updated last year
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated last year
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated 8 months ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆18Updated 5 months ago
• djhn75 / RNAEditor
  ☆14Updated 2 years ago
• gagneurlab / absplice
  ☆34Updated 5 months ago