mrymsadeghi / AMBIA
☆31Updated 3 months ago
Alternatives and similar repositories for AMBIA:
Users that are interested in AMBIA are comparing it to the libraries listed below
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated 10 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 3 months ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Open-source stereotaxic coordinator☆14Updated 2 years ago
- Histology processing☆65Updated 10 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- ☆51Updated 5 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆89Updated 2 months ago
- ☆18Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆72Updated 4 months ago
- Fiber photometry analysis☆22Updated last month
- pyqt5 dependent applications for IBL sessions☆25Updated last week
- Extract regions of interest based on correlated pixel intensity☆24Updated 7 years ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆21Updated this week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated this week
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- Registration of cells across sessions.☆71Updated 5 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 7 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated this week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated last year
- Brainways☆14Updated 2 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆129Updated this week
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 8 months ago
- ☆32Updated last year