mrymsadeghi / AMBIALinks
☆37Updated 3 months ago
Alternatives and similar repositories for AMBIA
Users that are interested in AMBIA are comparing it to the libraries listed below
Sorting:
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆109Updated 4 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆30Updated 2 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Updated 3 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- ☆52Updated last year
- ☆18Updated 3 years ago
- Histology processing☆71Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 3 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆141Updated last week
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆32Updated last week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Registration of cells across sessions.☆75Updated last year
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Brainways☆22Updated 4 months ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- 'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…☆11Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Automated 3D cell detection in very large images☆222Updated 2 weeks ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 9 months ago
- Calcium imaging inter-session alignment☆15Updated last week
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- ☆46Updated 5 years ago
- A Python interface to access neuroanatomical atlases☆168Updated last week