Universal Renderer for Neuroscience
☆16Nov 4, 2025Updated 11 months ago
Alternatives and similar repositories for Urchin
Users that are interested in Urchin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shared general purpose tools for the BrainGlobe project☆13Updated this week
- Python library for brain-wide quantification and spatial analysis.☆12Jun 26, 2026Updated 4 months ago
- ABBA, controlled from python☆21Oct 15, 2026Updated 2 weeks ago
- Brainways☆25Aug 28, 2025Updated last year
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Image pyramid generation for grayscale and segmentation image resize.☆12Jul 30, 2026Updated 2 months ago
- Shareable, interactive scientific figures in the cloud☆39Sep 4, 2025Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Oct 13, 2026Updated 2 weeks ago
- A framework for benchmarking pose estimation and point tracking methods on animal behaviour videos.☆13Oct 15, 2026Updated 2 weeks ago
- General information, resources and dicussions for the BrainGlobe project.☆12Feb 21, 2025Updated last year
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆14Oct 22, 2026Updated last week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 3 years ago
- Build unbiased anatomical templates from individual images☆14Oct 13, 2026Updated 2 weeks ago
- Anatomical space conventions made easy.☆13Oct 13, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Hennestad et al. 2022☆23Oct 19, 2026Updated last week
- EstrousNet is a deep learning network that provides unbiased classification of estrous stage.☆21Aug 28, 2025Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Jul 4, 2022Updated 4 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆61Oct 18, 2026Updated last week
- Derotate images acquired via multiphoton calcium imaging☆17Oct 16, 2026Updated 2 weeks ago
- a place to work on a specification for skeletons☆23Sep 14, 2026Updated last month
- Rendering anatomical heatmaps with brainrender and matplotlib☆53Oct 20, 2026Updated last week
- NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files☆27Aug 28, 2025Updated last year
- A tool for translating between common coordinate frameworks using deformation matrices.☆17Oct 15, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆20Oct 20, 2026Updated last week
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆17Aug 18, 2021Updated 5 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆34Oct 13, 2026Updated 2 weeks ago
- ☆20Apr 6, 2022Updated 4 years ago
- Python package for analysis and visualization of functional ultrasound imaging data.☆24Oct 23, 2026Updated last week
- Volume Visualization and Stereotaxic Planning☆11Sep 6, 2026Updated last month
- Generate a package-manager-friendly mouse brain atlases collection.☆23Aug 4, 2023Updated 3 years ago
- Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]☆19May 18, 2023Updated 3 years ago
- Browser-based NWB visualization and DANDI exploration☆65Oct 23, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆49Mar 18, 2025Updated last year
- A draft specification for the nifti-zarr format☆20Dec 5, 2025Updated 10 months ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆23Mar 30, 2026Updated 6 months ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated this week
- Spike sorting benchmarking system☆33Oct 9, 2026Updated 3 weeks ago
- A Python interface to access neuroanatomical atlases☆190Updated this week
- Streamlining statistical analysis by using plotting keywords in Python.☆18Apr 9, 2024Updated 2 years ago