brainglobe / brainglobe-atlasapiLinks
A Python interface to access neuroanatomical atlases
☆150Updated this week
Alternatives and similar repositories for brainglobe-atlasapi
Users that are interested in brainglobe-atlasapi are comparing it to the libraries listed below
Sorting:
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆96Updated last month
- ☆51Updated 9 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆144Updated this week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆54Updated last month
- ☆34Updated 2 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆26Updated 3 years ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Histology processing☆65Updated last month
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Automated 3D cell detection in very large images☆216Updated this week
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 8 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated last week
- Browser-based NWB visualization and DANDI exploration☆57Updated 2 weeks ago
- Algorithm for automated source extraction from 1P data☆20Updated last year
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆102Updated 5 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆41Updated this week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆59Updated this week
- miniscope analysis pipeline with interactive visualizations☆93Updated 10 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 5 months ago
- Registration of cells across sessions.☆75Updated 9 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated last month
- Tools to work with Allen Inst CCF data in matlab☆134Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆24Updated last month
- Data format specification schema for the NWB neurophysiology data format☆57Updated last week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆89Updated 6 months ago