A Python interface to access neuroanatomical atlases
☆187Sep 23, 2026Updated this week
Alternatives and similar repositories for brainglobe-atlasapi
Users that are interested in brainglobe-atlasapi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rendering anatomical heatmaps with brainrender and matplotlib☆52Sep 8, 2026Updated 2 weeks ago
- Build unbiased anatomical templates from individual images☆14Sep 9, 2026Updated 2 weeks ago
- brainglobe.info website☆14Updated this week
- Registration to BrainGlobe atlases in napari using Elastix☆33Sep 11, 2026Updated 2 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆150Sep 11, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Anatomical space conventions made easy.☆12Sep 8, 2026Updated 2 weeks ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Sep 8, 2026Updated 2 weeks ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Sep 8, 2026Updated 2 weeks ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- A Python package to visualise neuroanatomical data in atlas space☆671Updated this week
- Segmentation of anatomical structures in a common coordinate space☆37Sep 8, 2026Updated 2 weeks ago
- Derotate images acquired via multiphoton calcium imaging☆17Sep 7, 2026Updated 2 weeks ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- Automated 3D cell detection in very large images☆231Sep 11, 2026Updated 2 weeks ago
- ☆10Mar 15, 2023Updated 3 years ago
- A Python package to download neuronal morphologies☆17Sep 8, 2026Updated 2 weeks ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆24Jul 14, 2026Updated 2 months ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- ☆11Oct 21, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- A Python toolbox for analysing animal body movements across space and time☆298Updated this week
- Re-usable GitHub Action scripts☆14Sep 4, 2026Updated 3 weeks ago
- Automated and reproducible analysis of multiphoton imaging datasets☆25Updated this week
- A package to manage electrophysiology analysis.☆22Updated this week
- Fancier logging with python.☆16Sep 8, 2026Updated 2 weeks ago
- NIU website on common software problems and their troubleshooting☆10Jul 14, 2026Updated 2 months ago
- Standalone cellfinder cell detection algorithm☆19Jan 3, 2024Updated 2 years ago
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆61Sep 15, 2026Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆129Sep 8, 2026Updated 2 weeks ago
- Python package for analysis and visualization of functional ultrasound imaging data.☆22Updated this week
- Tool for the creation, validation and transfer of neuroscience project folders.☆36Sep 7, 2026Updated 2 weeks ago
- ☆18Feb 10, 2022Updated 4 years ago
- Mix-and-match computer vision tools for your animal behaviour analysis☆29Sep 7, 2026Updated 2 weeks ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago