brainglobe / brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
☆147Updated last week
Alternatives and similar repositories for brainglobe-atlasapi
Users that are interested in brainglobe-atlasapi are comparing it to the libraries listed below
Sorting:
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 7 months ago
- ☆51Updated 8 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Automated 3D cell detection in very large images☆217Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆140Updated this week
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated last week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆94Updated last month
- Histology processing☆64Updated 3 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆53Updated last month
- ☆34Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 5 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated 2 months ago
- Tools to work with Allen Inst CCF data in matlab☆134Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Browser-based NWB visualization and DANDI exploration☆57Updated 2 weeks ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆74Updated 2 months ago
- Registration of cells across sessions.☆75Updated 8 months ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆55Updated last year
- ☆18Updated 3 years ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 9 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated last month
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 6 months ago
- "Approaches to Study Neural Circuits" course☆65Updated 5 months ago
- ☆19Updated last year